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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACGGTTGGAGGTTACACAGATTTCTTTTGTTCTGTGCACCATGCAAGGAACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgttttctctgataatgtgctttattgggatttgtggggaacaaaacaggagagctgcgtgtcatttcattaagaagaaacgaaattagtaaca...

Basic information

species Zea mays
transcript GRMZM2G093359_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093359_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g10310.3 (Oryza sativa), 5'ss of exon 3
TCACGGTTGGAGGTTACACAGATTTCTTTTGTTCTGTGCACCATGCAAGGAACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgttttctctgataatgtgctttattgggatttgtggggaacaaaacaggagagctgcgtgtcatttcattaagaagaaacgaaattagtaaca
||||||| ||||  ||||| || ||||||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| ||||| || ||||||||||||||| |||||| |||  |||   | |  || || ||| |              | |    |   ||  | || |         |   || ||     
TCACGGTAGGAGACTACACCGACTTCTTTTGTTCTGTGCACCATGCAAGGAATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtattttct-tgaccatgccttgtgctgagacttgagacttgggttttgacataaacactaatc--tgcaatgtatgtttgcttcatcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149090120|gb|EE179418.2|EE179418
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|211516878|gb|FK974814.1|FK974814
EST:     ACTGCGGATTCATCTTCCGAGGGCCGCAGACTCC-GTTAATCCAAAATTG                         GTTTTATCTTCCA-TAGGATACAATGGACGA
genomic: ACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAA-TTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGA
EST: gi|149089319|gb|EE178541.2|EE178541
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|211514522|gb|FK974800.1|FK974800
EST:     CTGCGGATTCAATCTTCCGAGGGCCGCAGACTCCAGTTAATCCCAAATTG                         GTTTTATCTTCCAATAGGA
genomic: CTGCGGATTCA-TCTTCCGAGGGCCGCAGACTCCAGTTAATCC-AAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGA
EST: gi|211153843|gb|FK974844.1|FK974844
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGT
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGT
EST: gi|149008951|gb|EE041170.2|EE041170
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|29168004|gb|CB411264.1|CB411264
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATA
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATA
EST: gi|211153845|gb|FK974846.1|FK974846
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGG
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGG
EST: gi|12046552|gb|BF728691.1|BF728691
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|149104775|gb|EE290237.2|EE290237
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCNATAGGATACAATGGACGAGCATCATCTATAG
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAG
EST: gi|78180016|gb|DV550389.1|DV550389
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|86466218|gb|DY232591.1|DY232591
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGAACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|6973663|gb|AW438237.1|AW438237
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|211514526|gb|FK974804.1|FK974804
EST:     ACTGCGGATTCATCTTCCGAGGGCCGCAGACTCC-GTTAATCCCAAATTG                         GTTTTATCTTCCAATAGGATAC
genomic: ACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCC-AAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATAC
EST: gi|149094603|gb|EE180134.2|EE180134
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|101398071|gb|EB820910.1|EB820910
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|211516883|gb|FK974819.1|FK974819
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTTATCCAAATTG                         GTTTTATCTTCCAATAGGGATACA-TGGACGAGCATCATCTATAGTTGTGT
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGG-ATACAATGGACGAGCATCATCTATAGTTGTGT
EST: gi|93015898|gb|EB641418.1|EB641418
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATTGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|211512177|gb|FK974795.1|FK974795
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCCAATTG                         GGTTTTATCTTCCA
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagG-TTTTATCTTCCA
EST: gi|31350712|gb|CD435069.1|CD435069
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|31355275|gb|CD439632.1|CD439632
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|71424525|gb|DR806344.1|DR806344
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|148983250|gb|EE029217.2|EE029217
EST:     ACTGCGGATTCATCTTTCC-AGGGCCGCAGACTCCAGTTAATCCCAATTG                         GTTTTATCTTCC
genomic: ACTGCGGATTCATCTT-CCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCC
EST: gi|149106513|gb|EE188405.2|EE188405
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|89253028|gb|DY624814.1|DY624814
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: gi|211516880|gb|FK974816.1|FK974816
EST:     AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG                         GTTTTATCTTCCAATAGGATACAATGG
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGG