1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATTAAATTTGATGGTAAGGAGTTCCATTGGAAGCAAAGTGAGTCCTTATTGACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATGgtacactaatcttaattctatttatgttcatatttgtcaaactattactgtatgccagctaaaactttcgttgcag
species | Zea mays |
transcript | GRMZM2G091494_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATG ATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTGEST: gi|148965874|gb|EE016775.2|EE016775
genomic: GACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATGgtacactaat ... ttcgttgcagATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTG
EST: GACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATG ATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTGEST: gi|149077035|gb|EE165691.2|EE165691
genomic: GACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATGgtacactaat ... ttcgttgcagATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTTAATTGGCTTG
EST: GACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATG ATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTT
genomic: GACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATGgtacactaat ... ttcgttgcagATGAAATTAAGAGGAAGCAACTCCTGAGAAATTGGGCACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTAAATTTGATGGTAAGGAGTTCCATTGGAAGCAAAGTGAGTCCTTATTGACAATGCTGGAAGCTGAAGGAGTTGTAAAGCGAATATTCCCTTTGCATGgtacactaatcttaattctatttatgttcatatttgtcaaactattactgtatgccagctaaaactttcgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG