1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCAACTAGTAGATTCAATTGCTGAGAAACAAGCCCAAATTTTTTCAGAGGAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTTgtaagtacttccaatttaaatacttgccaaatgtactgtttaggtgcttcatgtgcctacagaattgctctgttggtctgaatctttgttgacgccctgtgatcctcaactaacaaaattgctcaaatcacctcaaattttctaatttgaattcaattctcattttgtag
species | Zea mays |
transcript | GRMZM2G075101_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTT GCCTGATATTGCTGAACTAGAGTTAAAGCTCTCGGAGTATACCAAAAAGATEST: gi|32800119|gb|CD952355.1|CD952355
genomic: GAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTTgtaagtactt ... cattttgtagGCCTGATATTGCTGAACTAGAGTTAAAGCTCTCGGAGTATACCAAAAAGAT
EST: GAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTT GCCTGATATTGCTGAACTAGAGTTAEST: gi|74246322|gb|DT654236.1|DT654236
genomic: GAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTTgtaagtactt ... cattttgtagGCCTGATATTGCTGAACTAGAGTTA
EST: GAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTT GCCTGATATTGCTGAACTAGAGTTAAAGCTCTCGGAGTATACCAAAAAGATEST: gi|71761514|gb|DR959451.1|DR959451
genomic: GAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTTgtaagtactt ... cattttgtagGCCTGATATTGCTGAACTAGAGTTAAAGCTCTCGGAGTATACCAAAAAGAT
EST: GAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTT GCCTGATATTGCTGAACTAGAGTTAAAGCTCTCGGAGTATACCAAAAAGATEST: gi|71773508|gb|DR971408.1|DR971408
genomic: GAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTTgtaagtactt ... cattttgtagGCCTGATATTGCTGAACTAGAGTTAAAGCTCTCGGAGTATACCAAAAAGAT
EST: GAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTT GCCTGATATTGCTGAACTAGAGTTAAAGCTCTCGGAGTATACCAAAAAGATEST: gi|76020456|gb|DT947626.1|DT947626
genomic: GAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTTgtaagtactt ... cattttgtagGCCTGATATTGCTGAACTAGAGTTAAAGCTCTCGGAGTATACCAAAAAGAT
EST: GAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTT GCCTGATATTGCTGAACTAGAGTTAAAGCTCTCGGAGTATACCAAAAAGATEST: gi|31364678|gb|CD449033.1|CD449033
genomic: GAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTTgtaagtactt ... cattttgtagGCCTGATATTGCTGAACTAGAGTTAAAGCTCTCGGAGTATACCAAAAAGAT
EST: TCAAATACAATCAATTTACCCCTT GCCTGATATTGCTGAACTAGAGTTAAAGCTCTCGGAGTATACCAAAAAGAT
genomic: TCAAATACAATCAATTTACCCCTTgtaagtactt ... cattttgtagGCCTGATATTGCTGAACTAGAGTTAAAGCTCTCGGAGTATACCAAAAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAACTAGTAGATTCAATTGCTGAGAAACAAGCCCAAATTTTTTCAGAGGAGTGCAAGCTTTTCCCTGCGGATGTTCAAATACAATCAATTTACCCCTTgtaagtacttccaatttaaatacttgccaaatgtactgtttaggtgcttcatgtgcctacagaattgctctgttggtctgaatctttgttgacgccctgtgatcctcaactaacaaaattgctcaaatcacctcaaattttctaatttgaattcaattctcattttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT