Sequence
atgc intronic sequence ATGC exonic sequenceAGGAAACTTTGTGCAACCAACAATTGTGGAAATTACACGTTCTGCACCAGTTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatatagttcaatattatgtttttttttgtattttgtatctgttctaatttctacaattgagaactactgtatctaatatccatgaggtttgtgtttcctacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G070514_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g26880.3 (Oryza sativa), 5'ss of exon 11
AGGAAACTTTGTGCAACCAACAATTGTGGAAATTACACGTTCTGCACCAGTTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatatagttcaatattatgttttttt-----ttgtattttgtatctgttctaatttctacaattgagaactactgtatc-taatatccatgaggttt-gtg----tttcctacag
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GGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAGAAGAACTCTTTGGTCCTGTTCTTTATGTGATGAAAGTTCAGgtataaaagattcaattactttgcttttatgttattgatctgtaatgtttggtgtcagttgtatagtgttggaccagatcattatcatttacactacttttcgtggtcattacctgcag
upper sequence: GRMZM2G070514_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G08150.2 (Glycine max), 5'ss of exon 10
AGGAAACTTTGTGCAACCAACAATTGTGGAAATTACACGTTCTGCACCAGTTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatatagttcaatattatgtttttttttg-tattttgtatctgttctaatttctacaattgagaactactgtatctaatatccatgaggtttgtgtttcctacag
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AGGAAATTTTGTACAACCAACAATTGTTGAGATTTCTCCAGATGCTCCTGTAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGgtagcatata-ttctatatcttctttcatcggactatttcttttggagtttagtt--tatgatcaa--acttcatgattttctacttag--------------------
upper sequence: GRMZM2G070514_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G19670.1 (Glycine max), 5'ss of exon 11
AGGAAACTTTGTGCAACCAACAATTGTGGAAATTACACGTTCTGCACCAGTTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatatagttcaatattatgtttttttttgtattttgtatctgttctaatttctacaattgagaactactgtatctaatatccatgaggtttgtgtttcctacag
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AGGAAATTTTGTACAACCAACAATTGTTGAGATTTCTCCCGATGCTCCTGTAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGgtagcatata-ttctatatcttctttcattggactatttattttggagtttaatt-tatgattga--acttcatgattttctacttag--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32806293|gb|CD958527.1|CD958527EST: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCTTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAAACTTTGTGCAACCAACAATTGTGGAAATTACACGTTCTGCACCAGTTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatatagttcaatattatgtttttttttgtattttgtatctgttctaatttctacaattgagaactactgtatctaatatccatgaggtttgtgtttcctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC