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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatcccaccatgtttcagtttgcttactctatgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccag

Basic information

species Zea mays
transcript GRMZM2G069102_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069102_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatcccaccatgtttcagtttgcttactctatgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccag
|||||||||||||| ||||||||||| || ||||| || ||| | ||||||||||||||||||||||||||||||||    || |         ||  || ||  |   ||||        | |||| |  ||  || || | | ||||  |  ||   |||
GTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGgtaagtggtcga------gtgataattaagcata--tact--------tagatcaatagtcaattggttaataaactgctctgctgcag

upper sequence: GRMZM2G069102_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT4G10610.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatata----tccatatcccaccatgtttcagtttgcttactctatgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccag
||||| |||||||| || ||||| || || || ||||| ||||||||||||||||| |||||||||||||| ||||  ||     ||  |||   | |   ||   |  |  |  || || ||  | | | ||  |||| ||   |    |               
GTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAGgtatcattagtttctctatgtaatctgtttattggataatgcctgtaagtgcttggtttatggtttgtcattttgggacttgtag--------

upper sequence: GRMZM2G069102_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatcccaccatgtttcagtttgcttactcta-tgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccag
||||| ||||||||||| || || |||||||| || |||||| ||||||| |||||||||||||||||||| |||| ||| ||  | || |    |  |  ||| |  | | | || |  | ||| |  |    || | |  |      ||            
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttctcg--gttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94472396|gb|EB701354.1|EB701354
EST:     GGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGG                         AGGGTGCAAGAGCTGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATC
genomic: GGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatc ... gatgtcccagAGGGTGCAAGAGCTGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATC