1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCAATTATCTTATCATCATGGGGTGAGAACTACGGAGATTCGTCTGACAGCAAGGACTTGATAACCCAGTTCAAGGGTGCAGCTAAAGCCATTGCTTCAGgtaggtttggcctgtcctagcttaggaaatggcttgataaatttagtgagttataaaattgacgtggaaggaacttgtgaaatttcag
species | Zea mays |
transcript | GRMZM2G067638_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAGGACTTGATAACCCAGTTCAAGGGTGCAGCTAAAGCCATTGCTTCAG ACGAGAAGATTGCATTGCTTGGAGCCATACAGTCATTGTTTGAGGGATCAAEST: gi|149111263|gb|EE294760.2|EE294760
genomic: CAAGGACTTGATAACCCAGTTCAAGGGTGCAGCTAAAGCCATTGCTTCAGgtaggtttgg ... gaaatttcagACGAGAAGATTGCATTGCTTGGAGCCATACAGTCATTGTTTGAGGGATCAA
EST: CAAGGACTTGATAACCCAGTTCAAGGGTGCAGCTAAAGCCATTGCTTCAG ACGAGAAGATTGCATTGCTTGGAGCCATACAGTCATTGEST: gi|76014974|gb|DT942144.1|DT942144
genomic: CAAGGACTTGATAACCCAGTTCAAGGGTGCAGCTAAAGCCATTGCTTCAGgtaggtttgg ... gaaatttcagACGAGAAGATTGCATTGCTTGGAGCCATACAGTCATTG
EST: CAAGGACTTGATAACCCAGTTCAAGGGTGCAGCTAAAGCCATTGCTTCAG ACGAGAAGATTGCATTGCTTGGAGCCATACAGTCATTGTTTGAGGGATCAAEST: gi|78117636|gb|DV536023.1|DV536023
genomic: CAAGGACTTGATAACCCAGTTCAAGGGTGCAGCTAAAGCCATTGCTTCAGgtaggtttgg ... gaaatttcagACGAGAAGATTGCATTGCTTGGAGCCATACAGTCATTGTTTGAGGGATCAA
EST: CAAGGACTTGATAACCCAGTTCAAGGGTGCAGCTAAAGCCATTGCTTCAG ACGAGAAGATTGCATTGCTTG
genomic: CAAGGACTTGATAACCCAGTTCAAGGGTGCAGCTAAAGCCATTGCTTCAGgtaggtttgg ... gaaatttcagACGAGAAGATTGCATTGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATTATCTTATCATCATGGGGTGAGAACTACGGAGATTCGTCTGACAGCAAGGACTTGATAACCCAGTTCAAGGGTGCAGCTAAAGCCATTGCTTCAGgtaggtttggcctgtcctagcttaggaaatggcttgataaatttagtgagttataaaattgacgtggaaggaacttgtgaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT