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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTACGTGGCCACTAGATGGTATCGAGCTCCAGAATTATGTGGCTCCTTTTTTTCAAAGgtgatgtctcaacttagcttcaatttgcgatcaacatatcaatgtatttttcctctgaaattgttacattagtttgataagtttggatccaacatagcga...

Basic information

species Zea mays
transcript GRMZM2G062761_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062761_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 4
GATTACGTGGCCACTAGATGGTATCGAGCTCCAGAATTATGTGGCTCCTTTTTTTCAAAGgtga---tgtctcaacttagcttcaatttgcgatcaaca-tatcaat-gtatttttcc-tctgaaattgttacattagtttgataagtttggatccaacatagcga
||||||||||| |||||||||||||| ||||| ||| | ||||| | |||||| || || || |   | | | | ||  |  |    |  |  |      | ||| | | |||| ||  | || |  | |||| || ||| ||| |   |   |   |  |     
GATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAAgtaagcttatgtaatctagggcttttgtgacagtttgtggtttcagttgcatttgtctgtatgtatcttttacttt-gttggattatcctcttttatattt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74245616|gb|DT653530.1|DT653530
EST:     CCACTAGATGGTATCGAGCTCCAGAATTATGTGGCTCCNNNNNNNCAAAG                         TACACTCCTGCCATTGATATTTGGAGCGTAGGGTGTATATTTTGCTGA-TT
genomic: CCACTAGATGGTATCGAGCTCCAGAATTATGTGGCTCCTTTTTTTCAAAGgtgatgtctc ... acttttgcagTACACTCCTGCCATTGATATTTGGAGCGTAGGGTGTATATTT-GCTGAATT