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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaacattttatgacttaactcttattgatgcatgctcaaatgctcacttgtgcaaacaagtagcatttttgtgctttgcgtgtgaagtttgttta...

Basic information

species Zea mays
transcript GRMZM2G050961_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G050961_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv15s0021g00830.t01 (Vitis vinifera), 5'ss of exon 5
ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaacattttatgacttaactcttattgatg--catgctcaaatgctcacttgtgcaaacaagtagcatttttgtgctttgcgtgtgaagtttgttta---------------------------------------------------------------------------------------------
||||| || || |||||||| ||  | ||||||||||||||||||||||||| |||   |    ||  |   | || ||| ||  | ||   ||||  |   ||  |  ||  | |   |||  ||    | |     |    || |  |                                                                                             
ATTCTCTCTATTGGTGCTGATGTTGGGGAAGTTGAGGCTGGGAAGAAGgtaatgaatcataatggatcttctttttgttggtgttcttgtataaataattttttcagtgaattatttatattgatgccactgggactagtgaattctccaagaagctggactttctatgcgcttaatggcattttttttatattctagtgcttttataccatctaaaggaagggaatggctatctttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17931024|gb|BM267984.1|BM267984
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|148935998|gb|EC880054.2|EC880054
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTTTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|211482968|gb|FK973427.1|FK973427
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGNTGGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTA
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGG-AAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTA
EST: gi|148936812|gb|EC880952.2|EC880952
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|15198996|gb|BI423600.1|BI423600
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|13249748|gb|BG360653.1|BG360653
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCT-GGAA-AAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|18166801|gb|BM336640.1|BM336640
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|17932013|gb|BM268973.1|BM268973
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|5070003|gb|AI737968.1|AI737968
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|29946418|gb|CB816140.1|CB816140
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|18179918|gb|BM381128.1|BM381128
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|18168788|gb|BM338628.1|BM338628
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|166466537|gb|EG225135.1|EG225135
EST:     AGATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: AGATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|149106539|gb|EE188431.2|EE188431
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|18163307|gb|BM333146.1|BM333146
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|18162775|gb|BM332614.1|BM332614
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|13558470|gb|BG549826.1|BG549826
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|26559456|gb|CA831691.1|CA831691
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|13558469|gb|BG549825.1|BG549825
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|29577011|gb|CB617123.1|CB617123
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|19058136|gb|BM736803.1|BM736803
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|6342692|gb|AW165516.1|AW165516
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAG-CATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|18167229|gb|BM337068.1|BM337068
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|15499585|gb|BI596098.1|BI596098
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAA                         GATCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|19058714|gb|BM737381.1|BM737381
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GNTCTCTTCTCAGACATCAATGCTTATGAGGTGGAGCTTG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAGGTGGAGCTTG
EST: gi|148942235|gb|EC887245.2|EC887245
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|211058060|gb|FL204106.1|FL204106
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|8577321|gb|BE129958.1|BE129958
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTGATATATTAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|71768573|gb|DR966510.1|DR966510
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|211061029|gb|FL204116.1|FL204116
EST:     ATTCTATCGATCGGCGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|18179223|gb|BM380433.1|BM380433
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|29947167|gb|CB816515.1|CB816515
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|211061027|gb|FL204114.1|FL204114
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|93016884|gb|EB642404.1|EB642404
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|18173180|gb|BM348568.1|BM348568
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|18165285|gb|BM335124.1|BM335124
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|211482957|gb|FK973416.1|FK973416
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|29167933|gb|CB411193.1|CB411193
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|211482965|gb|FK973424.1|FK973424
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|148942234|gb|EC887244.2|EC887244
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTTTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|211058063|gb|FL204109.1|FL204109
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|13382241|gb|BG458916.1|BG458916
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|32849976|gb|CD989657.1|CD989657
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|88748081|gb|DY532222.1|DY532222
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTTTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|6431818|gb|AW172022.1|AW172022
EST:     ATTCTATCGATCGGTGCTGAAGTCAGNGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|13237244|gb|BG355258.1|BG355258
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|16922801|gb|BM075793.1|BM075793
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG
EST: gi|29544990|gb|CB605168.1|CB605168
EST:     ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAG                         GTTCTCTTCTCAGACATCAATGCTTATGAG
genomic: ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaaca ... gcacttgcagGTTCTCTTCTCAGACATCAATGCTTATGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCTATCGATCGGTGCTGAAGTCAGTGAAGTTGAGGCTGGGAAGAAGgtaaggaacattttatgacttaactcttattgatgcatgctcaaatgctcacttgtgcaaacaagtagcatttttgtgctttgcgtgtgaagtttgttta

- - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAG