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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGTCATAAATGGTCTCACCGACTATAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgtagatcatcgtatcactgaagtaactgcatgtgctctatgcgtctaatttcgagatgggttctgaccaactgccttcttcaattgtgtag

Basic information

species Zea mays
transcript GRMZM2G046748_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G046748_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g47590.1 (Oryza sativa), 5'ss of exon 3
ACCTGTCATAAATGGTCTCACCGACTATAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgtagatcatcgtatcactgaagtaactgcatgtgctctatgcgtctaatttcgagatgggttctgaccaactgccttcttcaattgtgtag---
||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||| ||||||||||||||||||    | | || |      | |    |  | |   |||   ||    ||   || |||| || |  |  |||  |||||   |   
ACCTGTCATAAATGGCCTTACGGACTACAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGCTCGAACACATTGGTCGTATTGAAAACACTAAGgtagatcat----ttattgcaccctaaggaaccaccatgta-atcttgctttagtata--ttatgactaattttcaacttttattgttatgaag

upper sequence: GRMZM2G046748_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G03360.1 (Glycine max), 5'ss of exon 3
ACCTGTCATAAATGGTCTCACCGACTATAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgt-agatcatcgtatca---ctgaagtaactgcatgtgctctatgcgtc----taatttcgagatgggttctgaccaactgccttcttcaattgtgtag----
 || ||||| |||||  | || ||||| |||||||| |||||||||||||||||||| ||||| ||| |||||||| | |||||  ||||    || ||||| || | ||  | |      |||||    ||| | | |   || |||      | |    ||   | |  || |  ||||  |||| ||||      |    
GCCAGTCATCAATGGGTTGACAGACTACAACCATCCCTGCCAGATAATGGCTGATGCCCTTACCATGGTTGAGCACATAGGTCGGTTTGAAGGTACAAAGgtcaggttatgttgtttgtcttgaagattttgcttcttcctaattcgtggtggcattcgtaagggagttgttgtctgactgttttctgcaatacaaatgtcag

upper sequence: GRMZM2G046748_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G03280.1 (Glycine max), 5'ss of exon 3
ACCTGTCATAAATGGTCTCACCGACTATAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgt-agatcatcgtatca---ctgaagtaactgcatgtgctctatgcgtc----taatttcgagatgggttctgaccaactgccttcttcaattgtgtag-----
 || ||||| |||||  | || ||||| |||||||| |||||||||||||||||||| ||||| ||| |||||||| |||||||  ||||    || ||||| || | ||  |        ||||     ||| | | |   || | |      | |||| ||        || |  ||||  |||| || ||    |      
GCCAGTCATCAATGGGTTGACAGACTACAACCATCCCTGCCAGATAATGGCTGATGCCCTTACCATGGTTGAGCACATTGGTCGGTTTGAAGGTACAAAGgtcaggttatgttgcttgtcttgaaaagtttgcttcttcctaattcttggtggcattttcaagggaatagttgtcttactgtattctgca-ttacacatgtcag

upper sequence: GRMZM2G046748_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0001g12780.t01 (Vitis vinifera), 5'ss of exon 3
ACCTGTCATAAATGGTCTCACCGACTATAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgta-gatcatcgt-atcactgaagtaactgcatgtgctctatgcgtctaatttc-----gagatgggttctgaccaactgccttcttcaattgtgtag---------------------
||||||||| ||||| || || ||||| || ||||| ||||| |||||||||||||| || || ||  |||| ||| ||||||   | ||    ||||||||  ||  ||  | |||   |     |||  ||||  |  |  | | ||   ||     ||   |   |       |    ||  |  |||    ||                      
ACCTGTCATCAATGGCCTGACAGACTACAATCATCCCTGCCAAATAATGGCTGATGCCCTCACAATAATTGAACACATTGGTCAGTTGGAAGGAACTAAGgtccgactatttttatctgggtcaagactctatgtatttgac-catttagcatctccttgatcagatattcagttgaaattctagtctaatctgatatgatgaccatgtgaaaaaccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438747|gb|DR819797.1|DR819797
EST:     CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAG                         GTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
genomic: CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgtagatcatc ... aattgtgtagGTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
EST: gi|78093456|gb|DV521830.1|DV521830
EST:     CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAG                         GTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
genomic: CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgtagatcatc ... aattgtgtagGTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
EST: gi|71764923|gb|DR962860.1|DR962860
EST:     CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAG                         GTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
genomic: CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgtagatcatc ... aattgtgtagGTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
EST: gi|211274950|gb|FL031478.1|FL031478
EST:     CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAG                         GTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
genomic: CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgtagatcatc ... aattgtgtagGTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
EST: gi|78111650|gb|DV530047.1|DV530047
EST:     CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAG                         GTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
genomic: CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgtagatcatc ... aattgtgtagGTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
EST: gi|76021130|gb|DT948300.1|DT948300
EST:     CTGATGCACTTACTATGCTTGAGCACCTTGGTCGCATTGAGAACACTAAA                         GTTGTCTATGTTGGAGATGGG
genomic: CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgtagatcatc ... aattgtgtagGTTGTCTATGTTGGAGATGGG
EST: gi|60348417|gb|DN215390.1|DN215390
EST:     GAGCACGTTGGTCGCATTGAGAACACTAAG                         GTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
genomic: GAGCACGTTGGTCGCATTGAGAACACTAAGgtagatcatc ... aattgtgtagGTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
EST: gi|50324509|gb|CO519635.1|CO519635
EST:     CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAG                         GTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
genomic: CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgtagatcatc ... aattgtgtagGTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
EST: gi|211274953|gb|FL031481.1|FL031481
EST:     CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAG                         GTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG
genomic: CTGATGCACTTACTATGCTTGAGCACGTTGGTCGCATTGAGAACACTAAGgtagatcatc ... aattgtgtagGTTGTCTATGTTGGAGATGGGAACAACATTGTGCACTCGTGGCTTCTATTG