1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GCCTGGGAAGGACGTGCATATGACTATGGGATGGACAACCTCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTGgtagtgcctgcagtgcacttctttcctaatacattgaagcacttaaatcacctctagtgatacaattgctgtgtcacag
species | Zea mays |
transcript | GRMZM2G044819_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTG GTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCTEST: gi|17970200|gb|BM276964.1|BM276964
genomic: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTGgtagtgcctg ... tgtgtcacagGTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCT
EST: CAAGAGCATGGGTTTTCCAGTAGATGTACCTTAAATTTGACCCTGACCTG GTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCTEST: gi|149071776|gb|EE160171.2|EE160171
genomic: CAAGAGCATGGGTTTTCCAGTAGATG-ACCTTAAATTTGACCCTGACCTGgtagtgcctg ... tgtgtcacagGTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCT
EST: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTG GTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCTEST: gi|22935698|gb|BU571973.1|BU571973
genomic: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTGgtagtgcctg ... tgtgtcacagGTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCT
EST: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTG GTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCTEST: gi|148931443|gb|EC874416.2|EC874416
genomic: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTGgtagtgcctg ... tgtgtcacagGTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCT
EST: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTG GTCATAAGAGGTCTTGTTATTGATAAAGAGAAAGGAAACTTGTTTAAAGCTEST: gi|26559582|gb|CA831817.1|CA831817
genomic: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTGgtagtgcctg ... tgtgtcacagGTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCT
EST: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTG GTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCTEST: gi|32937883|gb|CF042702.1|CF042702
genomic: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTGgtagtgcctg ... tgtgtcacagGTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCT
EST: GATGACCTTAAATTTGACCCTGACCTG GTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCTEST: gi|71446139|gb|DR827189.1|DR827189
genomic: GATGACCTTAAATTTGACCCTGACCTGgtagtgcctg ... tgtgtcacagGTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCT
EST: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTG GTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCTEST: gi|87156662|gb|DY401451.1|DY401451
genomic: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTGgtagtgcctg ... tgtgtcacagGTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCT
EST: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTG GTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCTEST: gi|211437116|gb|FL188838.1|FL188838
genomic: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTGgtagtgcctg ... tgtgtcacagGTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCT
EST: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTG GTCATAAGAAGGTCTEST: gi|148967093|gb|EE018263.2|EE018263
genomic: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTGgtagtgcctg ... tgtgtcacagGTCATAAGA-GGTCT
EST: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTG GTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCT
genomic: TCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTGgtagtgcctg ... tgtgtcacagGTCATAAGAGGTCTTGTTATTGATAAAGAGAAGGGAAACTTGGTTAAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTGGGAAGGACGTGCATATGACTATGGGATGGACAACCTCAAGAGCATGGGTTTTCCAGTAGATGACCTTAAATTTGACCCTGACCTGgtagtgcctgcagtgcacttctttcctaatacattgaagcacttaaatcacctctagtgatacaattgctgtgtcacag
- - - - - - - - - - - - - - - - - - - - - AGAGCA