1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGGGTTGGGTCGACTGCATCAACAGCAGTTTTGATTGGCAACCATCTGTATGTGGCCAATGTTGGTGATTCAAGGGCTGTACTATCAAAGGCAGGCAAAGgttatatttttctaaaattctgtcacttcactagtcagttgatattgtacaataaacttgcatgtctgtgacactagccataaaaaaattataacattgt...
species | Zea mays |
transcript | GRMZM2G040642_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAAGGCAGGCAAAG CTATTGCACTCTCTGATGTCCATAAACCAAACAGAAGTGAGGAGCAGAAACEST: gi|148956419|gb|EC902240.2|EC902240
genomic: CAAAGGCAGGCAAAGgttatatttt ... ttatttgcagCTATTGCACTCTCTGATGACCATAAACCAAACAGAAGTGATGAGCAGAAAC
EST: TCAAAGGCAGGCAAAG CTATTGCACTCTCTGATGACCATAAACCAAACAGAAGTGATGAGCAGAAACEST: gi|71773682|gb|DR971579.1|DR971579
genomic: TCAAAGGCAGGCAAAGgttatatttt ... ttatttgcagCTATTGCACTCTCTGATGACCATAAACCAAACAGAAGTGATGAGCAGAAAC
EST: TGTGGCCAATGTTGGTGATTCAAGGGCTGTACTATCAAAGGCAGGCAAAG CTATTGCACTCTCTGATGCCCATAAACCAAACAGAAGTGATGAGCAGAAACEST: gi|33097195|gb|CF057155.1|CF057155
genomic: TGTGGCCAATGTTGGTGATTCAAGGGCTGTACTATCAAAGGCAGGCAAAGgttatatttt ... ttatttgcagCTATTGCACTCTCTGATGACCATAAACCAAACAGAAGTGATGAGCAGAAAC
EST: TGTGGCCAATGTTGGTGATTCAAGGGCTGTACTATCAAAGGCAGGCAAAG CTATTGCACTCTCTGATGACCATAAACCAAACAGAAGTGATGAGCAGAAAC
genomic: TGTGGCCAATGTTGGTGATTCAAGGGCTGTACTATCAAAGGCAGGCAAAGgttatatttt ... ttatttgcagCTATTGCACTCTCTGATGACCATAAACCAAACAGAAGTGATGAGCAGAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGTTGGGTCGACTGCATCAACAGCAGTTTTGATTGGCAACCATCTGTATGTGGCCAATGTTGGTGATTCAAGGGCTGTACTATCAAAGGCAGGCAAAGgttatatttttctaaaattctgtcacttcactagtcagttgatattgtacaataaacttgcatgtctgtgacactagccataaaaaaattataacattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaat