1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAGgtaaaccaaattttagagtgtgtgtattagacagagctgatgtgccatagtagtagataagacatttggaaaatgttaccaacaccaaaccggtgtttgt...
species | Zea mays |
transcript | GRMZM2G035150_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAG GTTGGTGGTGTACGGTTTGGTEST: gi|74235678|gb|DT643592.1|DT643592
genomic: ATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAGgtaaaccaaa ... tttccaaaagGTTGGTGGTGTACGGTTTGGT
EST: TGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAG GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGEST: gi|78092883|gb|DV521257.1|DV521257
genomic: TGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAGgtaaaccaaa ... tttccaaaagGTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTG
EST: AAGCCATTTCAGATCATCAAAGACTTCTTGACAG GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGEST: gi|71427954|gb|DR809004.1|DR809004
genomic: AAGCCATTTCAGATCATCAAAGACTTCTTGACAGgtaaaccaaa ... tttccaaaagGTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTG
EST: ATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAG GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGGTAAAGGAGATGGCAACTGEST: gi|76289426|gb|DV028994.1|DV028994
genomic: ATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAGgtaaaccaaa ... tttccaaaagGTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTG
EST: CATCAAAGGCTTCTTGACAG GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGEST: gi|71427953|gb|DR809003.1|DR809003
genomic: CATCAAAGACTTCTTGACAGgtaaaccaaa ... tttccaaaagGTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTG
EST: GCCATTTCAGATCATCAAAGACTTCTTGACAG GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGEST: gi|74235679|gb|DT643593.1|DT643593
genomic: GCCATTTCAGATCATCAAAGACTTCTTGACAGgtaaaccaaa ... tttccaaaagGTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTG
EST: ATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAG GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGGCA-CTEST: gi|86466720|gb|DY233090.1|DY233090
genomic: ATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAGgtaaaccaaa ... tttccaaaagGTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGG-CAACT
EST: ATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAG GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGEST: gi|71427180|gb|DR808230.1|DR808230
genomic: ATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAGgtaaaccaaa ... tttccaaaagGTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTG
EST: GCCATTTCAGATCATCAAAGACTTCTTGACAG GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTGEST: gi|76291810|gb|DV031378.1|DV031378
genomic: GCCATTTCAGATCATCAAAGACTTCTTGACAGgtaaaccaaa ... tttccaaaagGTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTG
EST: ATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAG GTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTG
genomic: ATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAGgtaaaccaaa ... tttccaaaagGTTGGTGGTGTACGGTTTGGTTGATCTCAAGGTTAAAGGAGATGGCAACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCAGATCATCAAAGACTTCTTGACAGgtaaaccaaattttagagtgtgtgtattagacagagctgatgtgccatagtagtagataagacatttggaaaatgttaccaacaccaaaccggtgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA