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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACACCTTATGAAGCTGCAGCTGTTGTTTTAGAAGACTATGGACTCCCTTACTCTACAGAAGAGTTCCTCTCGATGATTACTCCGATGTTCAGTGAGCAgtaatgcaatggaacttctatgcacttgtattttttttccagaagtcacactgaaatgctatatgtagaggcctagagggggttgttaaatgtgtttgac...

Basic information

species Zea mays
transcript GRMZM2G027115_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g32730.1 (Oryza sativa), 5'ss of exon 3
AGACACCTTATGAAGCTGCAGCTGTTGTTTTAGAAGACTATGGACTCCCTTACTCTACAGAAGAGTTCCTCTCGATGATTACTCCGATGTTCAGTGAGCAgtaatgcaa-tggaacttctatgcacttgtatttttt---ttccagaagt--cacactgaaatgctatatgtagaggcctagagggggttgttaaatgtgtttgac
||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||| ||||||| ||||||| ||||||||| ||    || |||||||   ||||  |||   ||   ||    || |  || ||||   |||||  |  |      | |||    ||  || || | | |   
AGACACCTTATGAGGCAGCAGCTGTTGTTTTAGAAGATTATGGACTCCCTTACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgctgaaacttcttaacactcatataacttgcattttgtaaattgcatactgccgtgctacctcaa------tggagaatctttgtacatttctctttg

upper sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv00s0181g00140.t01 (Vitis vinifera), 5'ss of exon 3
AGACACCTTATGAAGCTGCAGCTGTTGTTTTAGAAGACTATGGACTCCCTTACTCTACAGAAGAGTTCCTCTCGATGATTACTCCGATGTTCAGTGAGCAgtaatgcaatggaacttctatgcacttgtattttttttccagaagt-cacactgaaatgctatatgt---agaggcctagagggggttgttaaatgtgtttgac
||||||||| |||||||||||||||| || | ||||||||||| ||||||| | | || |||||  |  | ||    ||||| |||||||||    | |||||| | ||   |   |  ||   ||| |||||       |    |    |    |||  | ||  |      |  ||  |      |   | |  | || |  
AGACACCTTTTGAAGCTGCAGCTGTTATTGTGGAAGACTATGGGCTCCCTTGCACAACTGAAGAACTTATGTCAGAAATTACCCCGATGTTCTCCAATCAgtaa-gtaactta---tacatttccttttatttcagaattaaggatatggatcagaataatttaaattaggaggatcttaattcaaattccagaaatcttagtg

upper sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv00s0181g00130.t01 (Vitis vinifera), 5'ss of exon 2
AGACACCTTATGAAGCTGCAGCTGTTGTTTTAGAAGACTATGGACTCCCTTACTCTACAGAAGAGTTCCTCTCGATGATTACTCCGATGTTCAGTGAGCAgtaatgcaatggaacttctatgcacttgtattttttttccagaagt-cacactgaaatgctatatgt---agaggcctagagggggttgttaaatgtgtttgac
||||||||| |||||||||||||||| || | ||||||||||| ||||||| | | || |||||  |  | ||    ||||| || ||||||    | |||||| | ||   |   |  ||   ||| |||||       |    |    |    |||  | ||  |      |  ||  |      |   | |  | || |  
AGACACCTTTTGAAGCTGCAGCTGTTATTGTGGAAGACTATGGGCTCCCTTGCACAACTGAAGAACTTATGTCAGAAATTACCCCAATGTTCTCCAATCAgtaa-gtaactta---tacatttccttttatttcagaattaaggatatggatcagaataatttaaattaggaggatcttaattcaaattccagaaatcttagtg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71761908|gb|DR959845.1|DR959845
EST:     TACTCTACAGAAGAGTTCCTCTCGATGATTACTCCGATGTTCAGTGAGCA                         GTGGTGCAACTTAAAACCACTTCCAGGAGCTAATCGACTGATAAAACATTT
genomic: TACTCTACAGAAGAGTTCCTCTCGATGATTACTCCGATGTTCAGTGAGCAgtaatgcaat ... catatcgcagGTGGTGCAACTTAAAACCACTTCCAGGAGCTAATCGACTGATAAAACATTT
EST: gi|76018984|gb|DT946154.1|DT946154
EST:     TACTCTACAGAAGAGTTCCTCTCGATGATTACTCCGATGTTCAGTGAGCA                         GTGGTGCAACTTAAAACCACTTCCAGGAGCTAATCGACTGATAAAACATTT
genomic: TACTCTACAGAAGAGTTCCTCTCGATGATTACTCCGATGTTCAGTGAGCAgtaatgcaat ... catatcgcagGTGGTGCAACTTAAAACCACTTCCAGGAGCTAATCGACTGATAAAACATTT