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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCAATCAAGAAGCGACACAGTGAATACATCTCTTTTTGACAAAAGGGAAAACATTGAGAAATTACATCGCACACGCAATCTGCTCCGGAAAGTTCAAgtatactctcctgcttacattattaatattattagaactaatgatttacactgctcagtcattgctatcaagaagcaataataatatggttaaacctaag...

Basic information

species Zea mays
transcript GRMZM2G023858_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023858_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g52770.1 (Oryza sativa), 5'ss of exon 4
AGTGCAATCAAGAAGCGACACAGTGAATACATCTCTTTTTGACAAAAGGGAAAACATTGAGAAATTACATCGCACACGCAATCTGCTCCGGAAAGTTCAAgta--tactctcctgcttacattattaatattattagaactaatgattt-acactgctcagtcattgctatcaagaagcaataataatatggttaaacctaag
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||| ||||| ||||||||||||   | | | |||  |   |||||         | ||||| |  ||| | |     | ||   |  | |      |  || || |     | |    | | 
AGTGCAATCAAGAAGTGACACAGTGAATACATCTCTTTTTGACAAGAGGGAAAACATAGAGAAACTACATCGTACACGCAATCTCCTCCGAAAAGTTCAAgtaagcattgttctgtctgtgttatt--ctcccccaaaactactttttttatatgatcctgtttgtagtgtagtactgttatcatcaagaactaatgattta-

upper sequence: GRMZM2G023858_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 4
AGTGCAATCAAGAAGCGACACAGTGAATACATCTCTTTTTGACAAAAGGGAAAACATTGAGAAATTACATCGCACACGCAATCTGCTCCGGAAAGTTCAAgtat---actctcctgcttacattattaatattattagaactaatgatttacactgctcagtcattgctatcaagaagcaataataatatggttaaacctaag
 || ||||| ||||| ||    || ||||| ||||||||||| ||||| ||| | || |||||||| ||||| ||||| ||||| || ||||||||||| ||||   | | | ||  | | ||   || | ||  ||   ||  ||   |  | ||     |   |   | ||   |    ||   || || | ||     | 
TGTTCAATCTAGAAGTGATGGGGTTAATACCTCTCTTTTTGAGAAAAGAGAACATATAGAGAAATTGCATCGAACACGAAATCTTCTTCGGAAAGTTCAGgtattaaaatttactagtca-atgtgtagtgttgctatttctcgtgtagtggaatgacatctttgtaagagcattgacttctagagat-tgatcaatgtgca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355060|gb|CD439417.1|CD439417
EST:     AAAACATTGAGAAATTACATCGCACACGCAATCTGCTCCGGAAAGTTCAA                         TTCATATATGACCTTCCAACTCGTCTTAACAAATGCATCAAGACAGAAGCA
genomic: AAAACATTGAGAAATTACATCGCACACGCAATCTGCTCCGGAAAGTTCAAgtatactctc ... tcttttgcagTTCATATATGACCTTCCAACTCGTCTTAACAAATGCATCAAGACAGAAGCA
EST: gi|6626566|gb|AW258098.1|AW258098
EST:     AAAACATTGAGAAATTACATCGCACACGCAATCTGCTCCGGAAAGTTCAA                         TTCATATATGACCTTCCAACTCGTCTTAACAAATGCATCAAGACAGAAGCA
genomic: AAAACATTGAGAAATTACATCGCACACGCAATCTGCTCCGGAAAGTTCAAgtatactctc ... tcttttgcagTTCATATATGACCTTCCAACTCGTCTTAACAAATGCATCAAGACAGAAGCA