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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTCTACCTGGTCATGATCTCTGACCTCTTCAATGAAGATGCGCACAATAGCATAATAATTGACAGAAAATCATGGCTATCCGATTGCATGTTTGGGgtaagctgcgcatttcaactttatttctctctccgtttaaggacaatcgatttgttgtccatgtatactgcatgtctttcagaataaaaagaacatgaaaatgttataagaaataagttgttgcctctgcag

Basic information

species Zea mays
transcript GRMZM2G021589_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G021589_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g60120.3 (Oryza sativa), 5'ss of exon 4
------------TTCTTTCTACCTGGTCATGATCTCTGACCTCTTCAATGAAGATGCGCACAATAGCATAATAATTGACAGAAAATCATGGCTATCCGATTGCATGTTTGGGgtaagctgcgcatttcaactttatttctctctccgtttaaggacaatcgatttgttgtccatgtatactgcatgtctttcagaataaaaagaacatgaaaatgttataagaaataagt-tgttgc-ctctgcag----------------------------------------------------------------
            |||||| ||||||||  |||| ||||||||||||            || |  | |||||||||||| ||||| ||||||||||| |||  ||||||||||||||||||  ||||||        | |||| | |    || |  ||    | |  | |   |  ||  ||||   ||||||||| ||||  || | |||||| | | ||    |     | |||  || ||||                                                                 
TGCAGCTGTTGTTTCTTTTTACCTGGTTGTGATATCTGACCTCTTC------------CATAGCAACATAATAATTGATAGAAACTCATGGCTATCTGATGCCATGTTTGGGgtaagctgttcatttc-------ctgctctgttctgagaaagttaaattttctcatataatttaattatgcacacctttcagaacaaaataaaaa-gaaaatctaaaaaatgttcttcatattgttctttgcatcaagtggcacaacatgcaaatgataaccgtataatgtatcattttaaattcatgtattgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89761412|gb|DY689435.1|DY689435
EST:     ATAGCATAATAATTGACAGAAAATCATGGCTATCCGATTGCATGTTTGGG                         GTCTCGATCGGTTACTTTTTGACAGACTTGACGATGATCATGCTGTATTTT
genomic: ATAGCATAATAATTGACAGAAAATCATGGCTATCCGATTGCATGTTTGGGgtaagctgcg ... gcctctgcagGTCTCGATCGGTTACTTTTTGACAGACTTGACGATGATCATGCTGTATTTT
EST: gi|37426015|gb|CF650757.1|CF650757
EST:     ATAGCATAATAATTGACAGAAAATCATGGCTATCCGATTGCATGTTTGGG                         GTCTCGATCGGGTACTTTTTGACAGACTTGACGATGATCATGCTGGATTTT
genomic: ATAGCATAATAATTGACAGAAAATCATGGCTATCCGATTGCATGTTTGGGgtaagctgcg ... gcctctgcagGTCTCGATCGGTTACTTTTTGACAGACTTGACGATGATCATGCTGTATTTT
EST: gi|13557778|gb|BG549134.1|BG549134
EST:     ATAGCATAATAATTGACAGAAAATCATGGCTATCCGATTGCATGTTTGGG                         GTCTCGATCGGTTACTTTTTGACAGACTTGACGATGATCATGCTGTATTTT
genomic: ATAGCATAATAATTGACAGAAAATCATGGCTATCCGATTGCATGTTTGGGgtaagctgcg ... gcctctgcagGTCTCGATCGGTTACTTTTTGACAGACTTGACGATGATCATGCTGTATTTT
EST: gi|22520701|gb|BU079512.1|BU079512
EST:     ATAGCATAATAATTGACAGAAAATCATGGCTATCCGATTGCATGTTTGGG                         GTCTCGATCGGTTACTTTTTGACAGACTTGACGATGATCATGCTGTATTTT
genomic: ATAGCATAATAATTGACAGAAAATCATGGCTATCCGATTGCATGTTTGGGgtaagctgcg ... gcctctgcagGTCTCGATCGGTTACTTTTTGACAGACTTGACGATGATCATGCTGTATTTT
EST: gi|76290363|gb|DV029931.1|DV029931
EST:     ATAGCATAATAATTGACAGAAAATCATGGCTATCCGATTGCATGTTTGGG                         GTCTCGATCGGTTACTTTTTGACAGACTTGACGATGATCATGCTGTATTTT
genomic: ATAGCATAATAATTGACAGAAAATCATGGCTATCCGATTGCATGTTTGGGgtaagctgcg ... gcctctgcagGTCTCGATCGGTTACTTTTTGACAGACTTGACGATGATCATGCTGTATTTT