1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctattccacatatacgtggccaatgggccgtgccaggccagcccggcccgaacccgtcatgggccgggccaaaataaacgggccgaggcacggcc...
species | Zea mays |
transcript | GRMZM2G018837_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|211057553|gb|FL294376.1|FL294376
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGTGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGAGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|211057556|gb|FL294379.1|FL294379
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACCGCGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|211057557|gb|FL294380.1|FL294380
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|26557412|gb|CA829647.1|CA829647
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|211054587|gb|FL294369.1|FL294369
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|76937510|gb|DV175167.1|DV175167
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|149000276|gb|EE037432.2|EE037432
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|76910443|gb|DV163876.1|DV163876
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|211057550|gb|FL294373.1|FL294373
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|211054585|gb|FL294367.1|FL294367
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGTGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGAGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|211057551|gb|FL294374.1|FL294374
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGTGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGAGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|148974485|gb|EE025268.2|EE025268
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|148956501|gb|EC902338.2|EC902338
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|211054577|gb|FL294359.1|FL294359
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGTGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|149014700|gb|EE044372.2|EE044372
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|211057549|gb|FL294372.1|FL294372
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGTGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGAGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|37420242|gb|CF647811.1|CF647811
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAEST: gi|211054586|gb|FL294368.1|FL294368
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|76015275|gb|DT942445.1|DT942445
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctattccacatatacgtggccaatgggccgtgccaggccagcccggcccgaacccgtcatgggccgggccaaaataaacgggccgaggcacggcc
- - - - - AGTGGA
- - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataaa