1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
TTGTGGCTTAGGTTGCCTCTGGAGAAGTCCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACGgtaatttttttttgataattgagtgtgcctggaacatggtgtaaaagtatttcaggattatatataatgcacgcgtttatgtgttttctttag
species | Zea mays |
transcript | GRMZM2G011456_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACG CTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTGEST: gi|91876145|gb|EB406102.1|EB406102
genomic: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACGgtaatttttt ... ttttctttagCTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTG
EST: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACG CTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTGEST: gi|71311078|gb|DR791853.1|DR791853
genomic: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACGgtaatttttt ... ttttctttagCTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTG
EST: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACG CTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTGEST: gi|71300983|gb|DR786520.1|DR786520
genomic: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACGgtaatttttt ... ttttctttagCTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTG
EST: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACG CTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTGEST: gi|211230912|gb|FL222481.1|FL222481
genomic: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACGgtaatttttt ... ttttctttagCTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTG
EST: CCGAGCCTATGGATGGTGATCTTGATAAA-TAAAGA-CAACAAC-ACACG CTACAGAGTGAA-TAGCAGACTCATGGGGATTATGGAATTCATTTCAGAT-EST: gi|78117239|gb|DV535626.1|DV535626
genomic: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACGgtaatttttt ... ttttctttagCTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATT-CAGATT
EST: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACG --A--G--TGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTGEST: gi|74233408|gb|DT641322.1|DT641322
genomic: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACGgtaatttttt ... ttttctttagCTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTG
EST: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACG --A--G--TGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTGEST: gi|89762829|gb|DY690269.1|DY690269
genomic: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACGgtaatttttt ... ttttctttagCTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTG
EST: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACG --A--G--TGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTGEST: gi|89251153|gb|DY622939.1|DY622939
genomic: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACGgtaatttttt ... ttttctttagCTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTG
EST: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACG CTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTG
genomic: CCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACGgtaatttttt ... ttttctttagCTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGGCTTAGGTTGCCTCTGGAGAAGTCCGAGCCTATGGATGGTGATCTTGATAAAATAAAGAACAACAACCACACGgtaatttttttttgataattgagtgtgcctggaacatggtgtaaaagtatttcaggattatatataatgcacgcgtttatgtgttttctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC