1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATATCTGGTGCTAGCGTTGGAGAAGTTAAGGTTGTCTCCGACATGCACGAGAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTGgtacacaatctacatcttctttttctccagtacatgctggcagcgacatgtatctcgtttgatatggcgatgacgggtctctggacatcag
species | Zea mays |
transcript | GRMZM2G008726_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTG GAGGGTACGGAACAATGGAAGAACTGTEST: gi|211166478|gb|FK962667.1|FK962667
genomic: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTGgtacacaatc ... tggacatcagGAGGGTACGGAACAATGGAAGAACTGT
EST: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTG GAGGGTACGGAACAATGGAAGAACTGTTAEST: gi|211166479|gb|FK962668.1|FK962668
genomic: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTGgtacacaatc ... tggacatcagGAGGGTACGGAACAATGGAAGAACTGTTA
EST: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTG GAGGGTACGGAACAATGGEST: gi|211166480|gb|FK962669.1|FK962669
genomic: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTGgtacacaatc ... tggacatcagGAGGGTACGGAACAATGG
EST: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTG GAGGGTACGGAAEST: gi|211166481|gb|FK962670.1|FK962670
genomic: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTGgtacacaatc ... tggacatcagGAGGGTACGGAA
EST: GAGGAAAGCTGATATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTG GAGGGTACGGAACAATSGAAGAACTGTTAGAGATGATAACGTGGTCACAGCEST: gi|211040039|gb|FK962664.1|FK962664
genomic: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTGgtacacaatc ... tggacatcagGAGGGTACGGAACAATGGAAGAACTGTTAGAGATGATAACGTGGTCACAGC
EST: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTG GAGGGTACGGAACAATGGAAGAACTGTTAGAGEST: gi|211040034|gb|FK962659.1|FK962659
genomic: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTGgtacacaatc ... tggacatcagGAGGGTACGGAACAATGGAAGAACTGTTAGAG
EST: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTG GAGGGTACGGAACAATGEST: gi|211166482|gb|FK962671.1|FK962671
genomic: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTGgtacacaatc ... tggacatcagGAGGGTACGGAACAATG
EST: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTG GAGGGTACGGAACAATGGAAGAACTGTTAGAGATGATAACGTEST: gi|211040040|gb|FK962665.1|FK962665
genomic: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTGgtacacaatc ... tggacatcagGAGGGTACGGAACAATGGAAGAACTGTTAGAGATGATAACGT
EST: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTG GAGGGTACGGAACAATGGAAGAACTGTTEST: gi|211040031|gb|FK962656.1|FK962656
genomic: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTGgtacacaatc ... tggacatcagGAGGGTACGGAACAATGGAAGAACTGTT
EST: KAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTG GAGGGTACGGAACAATGGAAGAWCTGTTAGAGTATGATAACGTGGTCACAG
genomic: GAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTGgtacacaatc ... tggacatcagGAGGGTACGGAACAATGGAAGAACTGTTAGAG-ATGATAACGTGGTCACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCTGGTGCTAGCGTTGGAGAAGTTAAGGTTGTCTCCGACATGCACGAGAGGAAAGCTGAGATGGCACGGCAAGCTGATGCCTTCATAGCTCTTCCTGgtacacaatctacatcttctttttctccagtacatgctggcagcgacatgtatctcgtttgatatggcgatgacgggtctctggacatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT