1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTTCCTCCACAGGTTAAGTTCCCTTTATGTACTCTCGCCGAGACACCAAGAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGgtattattcttctctgcgcattatttctctccagacactgacccatcactactaactgttatattcacctttttag
species | Zea mays |
transcript | GRMZM2G007915_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAG GGTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGGEST: gi|67018949|gb|CO447698.1|CO447698
genomic: GAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGgtattattct ... acctttttagGTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGG
EST: GAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAG GTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGGEST: gi|33099725|gb|CF059685.1|CF059685
genomic: GAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGgtattattct ... acctttttagGTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGG
EST: GAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAG GTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGGEST: gi|211475001|gb|FK984421.1|FK984421
genomic: GAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGgtattattct ... acctttttagGTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGG
EST: GAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAG GTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGG
genomic: GAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGgtattattct ... acctttttagGTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCCTCCACAGGTTAAGTTCCCTTTATGTACTCTCGCCGAGACACCAAGAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGgtattattcttctctgcgcattatttctctccagacactgacccatcactactaactgttatattcacctttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA