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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgcaagatatctgtggcgttgctaaatttttttcccttagtggggaagtcggaatctgaagacctgaaccaagtttgatttacttttcaaag

Basic information

species Zea mays
transcript GRMZM2G003692_T06
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211527525|gb|FL409928.1|FL409928
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGA
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGA
EST: gi|211174932|gb|FL421412.1|FL421412
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAANAACATCCTCA                         GCAAGAATCCAGATAG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAG
EST: gi|149101270|gb|EE187382.2|EE187382
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: gi|37401832|gb|CF638282.1|CF638282
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: gi|211280391|gb|FL376816.1|FL376816
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: gi|211267130|gb|FL426696.1|FL426696
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: gi|211126709|gb|FL428259.1|FL428259
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: gi|40337101|gb|CK371171.1|CK371171
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: gi|211245303|gb|FL400469.1|FL400469
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGATTTGAAATGTTACCCATG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATG
EST: gi|211070635|gb|FL369038.1|FL369038
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACC-ATGGA
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGA
EST: gi|71298091|gb|DR785023.1|DR785023
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: gi|32919174|gb|CF023986.1|CF023986
EST:     ATCTGCACGTAACAAGGACGCACTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: gi|37397592|gb|CF636096.1|CF636096
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: gi|71311062|gb|DR791845.1|DR791845
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: gi|71311060|gb|DR791844.1|DR791844
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: gi|71438969|gb|DR820019.1|DR820019
EST:     ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA                         GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG