Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCTCACGGTGTGGGTGCGCTCCGACCTCCGCCGCTTCGTCCGCCGCCCCAGCGTCTCCTGCGTCGGATGCGGCGTCATGGGCTGCCTCGGCAACAAGgtgagtatatagtactgtacttggttactcccgaatatatggtggccgccggcgcggcatctctagctaagctaataagcaaacggtcgagaaacgaatggcag

Basic information

species Zea mays
transcript GRMZM5G876768_T05
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152390_T05 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g13520.1 (Oryza sativa), 5'ss of exon 4
CCTGCTCACGGTGTGGGTGCGCTCCGACCTCCGCCGCTTCGTCCGCCGCCCCAGCGTCTCCTGCGTCGGATGCGGCGTCATGGGCTGCCTCGGCAACAAGgtga---gtatatagtactgtacttggttactcccgaatatatggtggccgccggcgcg-gcatctctagctaagctaataagcaaacggtcga-----gaaacgaatggcag------------------------------------------
||| ||||| || ||||| ||| ||||||||  |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||          |        | |  |  | | |  |  | | |     |||  ||||| ||    | |||   ||    | |  || |           | ||| | ||||                                           
CCTCCTCACCGTCTGGGTCCGCGCCGACCTCGCCCGCTTCGTCCGCCGCGCCAGCGTCTCCTGCGTCGGCTGCGGCGTCATGGGCTGCCTCGGCAACAAGgtaccctacccctgacctatcattccgccattgctcaccacacgccacgcgcgcgcgcgcgcgcggcgagccgcgccgcgaggggaatgaattgtacctaacacgcacggcatcgatggatcgccacgggtgcatggctgtgcctggacgtgcag