1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaatccctttcttctgtcaatctctttatgcaagtgttttggttgtgactagatcatatcattctgcag
species | Zea mays |
transcript | GRMZM5G813909_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|149101643|gb|EE187775.2|EE187775
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|71767568|gb|DR965505.1|DR965505
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|211285085|gb|FL334458.1|FL334458
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACNATACTATACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGGAGAGTTAGEST: gi|29130241|gb|CB380945.1|CB380945
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGG-AGAGTTAG
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|211469576|gb|FL315154.1|FL315154
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTEST: gi|76293281|gb|DV032849.1|DV032849
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCT
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|71446633|gb|DR827683.1|DR827683
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|211337668|gb|FL335756.1|FL335756
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: AATGGATACTACCAATACTATACTATAGAGTTCTTCC-TGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCEST: gi|71330641|gb|DR802092.1|DR802092
genomic: AATGGATACTAC-AATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGC
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|211481369|gb|FL368104.1|FL368104
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: AATGGATACTACRAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAATGTTGGGCTGAGTGCTGAEST: gi|211477296|gb|FL319649.1|FL319649
genomic: AATGGATACTAC-AATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGA
EST: KAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AA-TCTGGAGAGTTAGTTTACCAGTGTTGGGCTGAGTGEST: gi|78091217|gb|DV519591.1|DV519591
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTT-ACCAGTGTTGGGCTGAGTG
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|211231531|gb|FL255915.1|FL255915
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|211231534|gb|FL255918.1|FL255918
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|211231535|gb|FL255919.1|FL255919
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: ACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|211456968|gb|FL307879.1|FL307879
genomic: ACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|50322421|gb|CO517547.1|CO517547
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|211023229|gb|FL319670.1|FL319670
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|211274143|gb|FL330839.1|FL330839
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|78114998|gb|DV533386.1|DV533386
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|78113447|gb|DV531839.1|DV531839
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|50334362|gb|CO529488.1|CO529488
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|37424619|gb|CF650042.1|CF650042
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|211203269|gb|FL344215.1|FL344215
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TANTGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAEST: gi|211195422|gb|FL326474.1|FL326474
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTEST: gi|71436743|gb|DR817793.1|DR817793
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTT
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATAEST: gi|211228866|gb|FL338409.1|FL338409
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
EST: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG AAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
genomic: TAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaa ... cattctgcagAAATCTGGAGAGTTAGTTACCAGTGTTGGGCTGAGTGCTGAGAATGAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAGgtaaaacaaatccctttcttctgtcaatctctttatgcaagtgttttggttgtgactagatcatatcattctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG