Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAGgtcacttatgctgtctttttttttctctccattgttgcattgattaattcaggcagccaaccactaaccattcttttcatgttaggtcaggttcttagttcttacatggttgtgtatgttaagtattgcag

Basic information

species Zea mays
transcript GRMZM2G413857_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G413857_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g09670.1 (Oryza sativa), 5'ss of exon 3
ACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAGgtcacttatgctgtctttttttttctctccattgttgcattgattaattcaggcagccaaccactaaccattcttttcatgttaggtcaggttcttagttcttacatggttgtgtatgttaagtattgcag
| ||||||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||| ||| ||  | ||||||||||| |||||||| || ||||||| | ||| || || ||| || |   ||| | ||   |      |||||     |      |      ||  | | ||  |       ||| ||   || ||||                         
ATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCGCTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCATGAGgtcagtcatgatggctctttcttac---ccaatattatgtaagc--attca-----ctgtttgcccgtatttgctctgatacttacatgtgttattttgtcctacag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89761919|gb|DY689741.1|DY689741
EST:     TGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAG                         TTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGTGCCATCTGTCGACGAC
genomic: TGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAGgtcacttatg ... agtattgcagTTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGTGCCATCTGTCGACGAC
EST: gi|211370584|gb|FL353380.1|FL353380
EST:     TGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAG                         TTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGTRGCCATCTGTCGACGA
genomic: TGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAGgtcacttatg ... agtattgcagTTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGT-GCCATCTGTCGACGA
EST: gi|71443344|gb|DR824394.1|DR824394
EST:     TGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAG                         TTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGTGCCATCTGTCGACGAC
genomic: TGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAGgtcacttatg ... agtattgcagTTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGTGCCATCTGTCGACGAC
EST: gi|211436829|gb|FL403332.1|FL403332
EST:     TGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAG                         TTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGTGCCATCTGTCGACGAC
genomic: TGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAGgtcacttatg ... agtattgcagTTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGTGCCATCTGTCGACGAC
EST: gi|71443847|gb|DR824897.1|DR824897
EST:     TGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAG                         TTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGTGCCATCTGTCGACGAC
genomic: TGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAGgtcacttatg ... agtattgcagTTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGTGCCATCTGTCGACGAC