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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCTCAATGAGGTGGTCTCCGAGGAGGAGATCGCGGCCTTCCTGTCGGAGTCGTACCCTGATAGCGATCACGAGATTGAATTCGAATCCTTCCTCCGGgtacacacatcgcggtgtttctctgattgtaatgtcgactggaatggattgctgtcctcaattgttctgacgggactagggaatctggtgcggtgttgttgcag

Basic information

species Zea mays
transcript GRMZM2G382341_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382341_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g48740.1 (Oryza sativa), 5'ss of exon 3
GGGGCTCAATGAGGTGGTCTCCGAGGAGGAGATCGCGGCCTTCCTGTCGGAGTCGTACCCTGATAGCGATCACGAGATTGAATTCGAATCCTTCCTCCGGgtacacacatcgcggtgtt-----tctctgattgtaatgtcgactggaatggattgctgtc-ctcaattgttctgacgggactagggaatctggtgcggtgttgttgcag
|||||||||||||||| ||||||||||||||||||| |||  | ||||  |||| ||||||||   ||| || |||||||| ||||| || ||||| |||||||| ||   |   | ||     |  ||| | ||| || |||  ||||| ||  |   |  |    ||| | |||  ||| | ||  ||   ||| |||||  ||| ||
GGGGCTCAATGAGGTGATCTCCGAGGAGGAGATCGCCGCCCACTTGTCCCAGTCTTACCCTGACGCCGACCAGGAGATTGAGTTCGAGTCATTCCTACGGgtaca-actcggttattttctgaattcctgttggtactgacgagaggaatagagcgtcattgcattgttgatttgattggaatggg--attatgtgtggtgtgtttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149105999|gb|EE291640.2|EE291640
EST:     AGTCGTACCCTGATAGCGATCACGAGATTGAATTCGAATCCTTCCTCCGG                         GAGTATCTTAATCTGCAGGCTCAGGTGAGTGCCAAGGAAGGTGGTGCCGGC
genomic: AGTCGTACCCTGATAGCGATCACGAGATTGAATTCGAATCCTTCCTCCGGgtacacacat ... gttgttgcagGAGTATCTTAATCTGCAGGCTCAGGTGAGTGCCAAGGAAGGTGGTGCCGGC