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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAGATGCTGTTAAAAACTGTCCACTGCGTACTATCTATTTCGAAAGCCCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAACgtaagagttgtctaagatgtgtctaactttacccttagtctatccgctatttaaggaagggcaggcctggtgcggtggcgagctgtctcactgaatcatc...

Basic information

species Zea mays
transcript GRMZM2G381933_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G381933_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g15490.2 (Oryza sativa), 5'ss of exon 3
AAACAGATGCTGTTAAAAACTGTCCACTGCGTACTATCTATTTCGAAAGCCCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAACgtaagagttgtctaagatgtgtctaactttacccttagtctatccgctatttaaggaagggcaggcctggtgcggtg-gcgagctgtctcactgaatcatc
|||   || || |  ||||||||||  |||| || |||||||| || |||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||  |  |||||||  ||           ||| || |||  ||||     |  | |  |       |    |  |    | ||    |  |      
AAATGAATACTATCCAAAACTGTCCTGTGCGCACCATCTATTTTGAGAGCCCTTGTGCTTTCCCTGAAATCAACTCATTCACTTATGAAACTGTCTCAACgtaagaaatcactaagattcgttg--------tctttgtttatttgctaaccttgagaagttaaatgaaatattctttgtcctccgttctccacag-----

upper sequence: GRMZM2G381933_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv08s0007g04980.t01 (Vitis vinifera), 5'ss of exon 4
AAACAGATGCTGTTAAAAACTGTCCACTGCGTACTATCTATTTCGAAAGCCCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAACgtaaga---gttgtctaagatgtgtctaactttacccttag-tctat---ccgctatttaaggaagggcaggcctggtgcggtggcgagctgtctcactgaatcatc----------------------------------------
 |||||||  ||        | |||| | || || || ||||| || ||||||| |||||||||||||||||||||||| |||||||| |  | | | |||| |||   ||   ||    | | ||  |  |||   || | |||         | ||||| | | |           |   ||||     | |   |   |||  |                                        
TAACAGATCATGAAGTTGCATTTCCAATTCGAACAATATATTTTGAGAGCCCTTCTGCTTTCCCTGAAATCAATTCATTTACTTATGAAACAGCCACTACgtgagaaaagtcccctttcctttttcagatattattttttgatctgcagatttttctttaacgcaagatgataaataagtcttggcttctaggcctgccatatctccaggcatctggttatgatttgacttattccttgttgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211136283|gb|FL006475.1|FL006475
EST:     CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGACTGTCTCAAC                         TTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
genomic: CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAACgtaagagttg ... tgctctacagTTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
EST: gi|211136285|gb|FL006477.1|FL006477
EST:     CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGACTGTCTCAAC                         TTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
genomic: CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAACgtaagagttg ... tgctctacagTTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
EST: gi|211136284|gb|FL006476.1|FL006476
EST:     CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGACTGTCTCAAC                         TTATGGGTTACCTCTGGAA-CCATCCATTCAGAATTCAAGTCTGGTCTAGA
genomic: CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAACgtaagagttg ... tgctctacagTTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
EST: gi|74242522|gb|DT650436.1|DT650436
EST:     CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAAC                         TTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
genomic: CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAACgtaagagttg ... tgctctacagTTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
EST: gi|31353159|gb|CD437516.1|CD437516
EST:     CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAAC                         TTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
genomic: CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAACgtaagagttg ... tgctctacagTTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
EST: gi|211136280|gb|FL006472.1|FL006472
EST:     CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGACTGTCTCAAC                         TTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
genomic: CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAACgtaagagttg ... tgctctacagTTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
EST: gi|211135349|gb|FL006468.1|FL006468
EST:     CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGACTGTCTCAAC                         TTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
genomic: CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAACgtaagagttg ... tgctctacagTTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
EST: gi|211135352|gb|FL006471.1|FL006471
EST:     CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGACTGTCTCAAC                         TTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA
genomic: CCTTGTGCTTTCCCTGAAATCAATTCATTCACTTATGAGATTGTCTCAACgtaagagttg ... tgctctacagTTATGGGTTACCTCTGGAAACCATCCATTCAGATTTCAAGTCTGGTCTAGA