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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCCCAGCCTTGAACCTTTGCTAGATGACTTGCTCCCAAAAAAGTCACCTATGATTGTTGTTAAATGgttagtagtttttttcttgtttggcatgtttgctgccagacattatgtttttttttgtcataatgttgcttacctgaaattgttttgaatttttttctct...

Basic information

species Zea mays
transcript GRMZM2G180990_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180990_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g21180.2 (Oryza sativa), 5'ss of exon 3
TACCCCAGCCTTGAACCTTTGCTAGATGACTTGCTCCCAAAAAAGTCACCTATGATTGTTGTTAAATGgttagtagtttttttctt-gtttggcatgtttgctgccagacattatgtttttttttgtcataatgttgcttacctgaaattgttttgaatttttttctct
|||||  |||| |||||| | ||||||||||| || ||||| ||||| |||||||||||||||||||||| ||||||||| | |||  | |   |||  ||||   | |    ||  |||      |  || | ||    |  || | |  |                 
TACCCTGGCCTCGAACCTCTACTAGATGACTTACTTCCAAAGAAGTCGCCTATGATTGTTGTTAAATGgtgagtagttttatccttcatatcatatgcatgcttagatagccaataatttgcaagattgtactatt-taaatgtgcactgatcacag------------

upper sequence: GRMZM2G180990_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g21180.1 (Oryza sativa), 5'ss of exon 3
TACCCCAGCCTTGAACCTTTGCTAGATGACTTGCTCCCAAAAAAGTCACCTATGATTGTTGTTAAATGgttagtagtttttttctt-gtttggcatgtttgctgccagacattatgtttttttttgtcataatgtt--gcttacctgaaattgttttgaatttttttctct--
|||||  |||| |||||| | ||||||||||| || ||||| ||||| |||||||||||||||||||||| ||||||||| | |||  | |   |||  ||||   | |    ||  |||      |  || | ||    |   |    ||     |   ||| ||||| |  
TACCCTGGCCTCGAACCTCTACTAGATGACTTACTTCCAAAGAAGTCGCCTATGATTGTTGTTAAATGgtgagtagttttatccttcatatcatatgcatgcttagatagccaataatttgcaagattgtactatttaaatgtgcactgatcacagttggtttctttctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32830385|gb|CD970063.1|CD970063
EST:     TTGCTAGATGACTTGCTCCCAAAAAAGTCACCTATGATTGTTGTTAAATG                         CCAAAATCATCTTAATCTTGTAGTGGTGAATAATGTTCCTCTATTTTTCAA
genomic: TTGCTAGATGACTTGCTCCCAAAAAAGTCACCTATGATTGTTGTTAAATGgttagtagtt ... cttcctgcagCCAAAATCATCTTAATCTTGTAGTGGTGAATAATGTTCCTCTATTTTTCAA
EST: gi|60337104|gb|DN204077.1|DN204077
EST:     TTGCTAGATGACTTGCTCCCAAAAAAGTCACCTATGATTGTTGTTAAATG                         CCAAAATCATCTTAATCTTGTAGTGGTGAATAATGTTCCTCTATTTTTCAA
genomic: TTGCTAGATGACTTGCTCCCAAAAAAGTCACCTATGATTGTTGTTAAATGgttagtagtt ... cttcctgcagCCAAAATCATCTTAATCTTGTAGTGGTGAATAATGTTCCTCTATTTTTCAA
EST: gi|32830364|gb|CD970042.1|CD970042
EST:     TTGCTAGATGACTTGCTCCCAAAAAAGTCACCTATGATTGTTGTTAAATG                         CCAAAATCATCTTAATCTTGTAGTGGTGAATAATGTTCCTCTATTTTTCAA
genomic: TTGCTAGATGACTTGCTCCCAAAAAAGTCACCTATGATTGTTGTTAAATGgttagtagtt ... cttcctgcagCCAAAATCATCTTAATCTTGTAGTGGTGAATAATGTTCCTCTATTTTTCAA