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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTACTGAAGCTGGTAGTGACCGTGTCATTGTATGTGATATTCATTCTACGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAGgtagtgtgagttcttcctttacagcgtttgatttcagtattgcatctcgttgtaaattctatctgactacgaattagtgtcatccttggtgtctgtag

Basic information

species Zea mays
transcript GRMZM2G180863_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180863_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g41360.1 (Oryza sativa), 5'ss of exon 4
ACTTACTGAAGCTGGTAGTGACCGTGTCATTGTATGTGATATTCATTCTACGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAGgtagtgtgag------------ttcttcctttacagcgt-----ttgatttcagtattgc---atctcgttg--taaattctatctgactacgaattagtgtc---atccttggtgtctgtag
|||||| |||||||| ||||| ||||| |||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||| ||||||||||| | | |             |  | | ||||   | |      || |||||||  | |   || |  ||   |  ||   |  || |  | || ||  |     ||| ||| | | |||||
ACTTACAGAAGCTGGGAGTGATCGTGTAATTGTATGTGATATTCATTCCACTCAAGCATTGGGATACTTCGATATTCCTGTGGATCATATACATGGACAGgtactcttaacagaccaagatatgttccttttattacctaaatgctgttttcagttgtacgcaattttcttagctggatctgagttggcagcaaagtaacgattgaatctttgttatatgtag

upper sequence: GRMZM2G180863_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ24123 (Selaginella moellendorffii), 5'ss of exon 4
ACTTACTGAAGCTGGTAGTGACCGTGTCATTGTATGTGATATTCATTCTACGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAGgtagtgtgagttct-tcctttacagcgtt-tgatttcagtattgcatctcgttgtaaattctatctgactacgaattagtgtcatccttggtgtctgtag
  | ||||| || |||    | |||||  |||  |||||| |||| |||   |||    |||||||||||||||||||||| |||||  | |||||||||||| |||| ||  | |  ||  || |||    ||| | ||||   ||||| |||    ||||  | |                                 
TATAACTGAGGCAGGTGCAAATCGTGTTCTTGCGTGTGATCTTCACTCTGGACAAAGTATGGGGTACTTCGATATTCCTGTTGATCACGTCTATGGACAGgta-tgtgcgtcatatttttctcaacgtcaccattcccgtataaaatctctttgctctttcttgcag---------------------------------

upper sequence: GRMZM2G180863_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ35181 (Selaginella moellendorffii), 5'ss of exon 4
ACTTACTGAAGCTGGTAGTGACCGTGTCATTGTATGTGATATTCATTCTACGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAGgtagtgtgagttct-tcctttacagcgtt-tgatttcagtattgca-tctcgttgtaaattctatctgactacgaattagtgtcatccttggtgtctgtag
  | ||||| || |||    | |||||  |||  |||||  |||| |||   |||    |||||||||||||||||||||| |||||  | |||||||||||| |||| ||  | |  ||  || |||    ||| | |||    | |||| |||    ||||  | |                                 
TATAACTGAGGCAGGTGCAAATCGTGTTCTTGCGTGTGACCTTCACTCTGGACAAAGTATGGGGTACTTCGATATTCCTGTTGATCACGTCTATGGACAGgta-tgtgcgtcatatttttctcaacgtcaccattcccgtacaaaaatctctttgctctttcttgcag---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6626351|gb|AW257883.1|AW257883
EST:     CACAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAG                         CCTGTGATTCTGGATTACCTGGCCAGCAAGACGATATCTGAAGATCTTGTG
genomic: CGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAGgtagtgtgag ... gtgtctgtagCCTGTGATTCTGGATTACCTGGCCAGCAAGACGATATCTGAAGATCTTGTG
EST: gi|74240297|gb|DT648211.1|DT648211
EST:     CGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAG                         CCTGTGATTCTGGATTACCTGGCCAGCAAGACGATATCTGAAGATCTTGTG
genomic: CGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAGgtagtgtgag ... gtgtctgtagCCTGTGATTCTGGATTACCTGGCCAGCAAGACGATATCTGAAGATCTTGTG
EST: gi|31354391|gb|CD438748.1|CD438748
EST:     CGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAG                         CCTGTGATTCTGGATTACCTGGCCAGCAAGACGATATCTGAAGATCTTGTG
genomic: CGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAGgtagtgtgag ... gtgtctgtagCCTGTGATTCTGGATTACCTGGCCAGCAAGACGATATCTGAAGATCTTGTG
EST: gi|149088668|gb|EE177786.2|EE177786
EST:     CGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAG                         CCTGTGATTCTGGATTACCTGGCCAGCAAGACGATATCTGAAGATCTTGTG
genomic: CGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAGgtagtgtgag ... gtgtctgtagCCTGTGATTCTGGATTACCTGGCCAGCAAGACGATATCTGAAGATCTTGTG
EST: gi|50322471|gb|CO517597.1|CO517597
EST:     CGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAG                         CCTGTGATTCTGGATTACCTGGCCAGCAAGACGATATCTGAAGATCTTGTG
genomic: CGCAAGCGTTGGGGTACTTCGATATTCCTGTGGATCATATATATGGACAGgtagtgtgag ... gtgtctgtagCCTGTGATTCTGGATTACCTGGCCAGCAAGACGATATCTGAAGATCTTGTG