1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTCGGTGCTGGGAGGTCATGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgattgtcttagcacttttttcacccagaagtgattcgtcttagcatttgctcatattagctgattatggatctagatgtctttgttctaggccctctgtatgcgactcacaggctggttttgtttcgtgcag
species | Zea mays |
transcript | GRMZM2G180815_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|211313573|gb|FL072330.1|FL072330
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|91878349|gb|EB408306.1|EB408306
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|71448754|gb|DR829804.1|DR829804
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|78073885|gb|DV502319.1|DV502319
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|74235195|gb|DT643109.1|DT643109
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|211313572|gb|FL072329.1|FL072329
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|88757960|gb|DY542101.1|DY542101
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|94472144|gb|EB701102.1|EB701102
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCEST: gi|211313574|gb|FL072331.1|FL072331
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG ATGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|74234227|gb|DT642141.1|DT642141
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|71432894|gb|DR813944.1|DR813944
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|50332450|gb|CO527576.1|CO527576
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|74240564|gb|DT648478.1|DT648478
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGCEST: gi|76930213|gb|DV172299.1|DV172299
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
EST: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCG GTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
genomic: TGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgat ... tttcgtgcagGTGCTGTGCTCGGCTTGGAAGGATGATGGGTTGACTGTTTTCTCAGGAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGGTGCTGGGAGGTCATGGCTGGTGGGGCCTGCCAAGCGAAGGCCTCCATTTCGCACGATCAACCGgtattgtgattgtcttagcacttttttcacccagaagtgattcgtcttagcatttgctcatattagctgattatggatctagatgtctttgttctaggccctctgtatgcgactcacaggctggttttgtttcgtgcag
- - - - - - - - - - - TGGTGG