1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATAAGATCAATGCAAAAATGGGAGAAGgtcagtttggatggccatgtcttctgaaataattgattaaactcgcgtttggcatgctgtgcaacacatgcagcaggttatgtttgtaacgaatgtgtctggaatacattag
species | Zea mays |
transcript | GRMZM2G179308_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAAAATGGGAGAAG GTACCTTTGGTCAGGTGTTGGAGTGTTGGGACAAGGAAAGGAAAGAAATGGEST: gi|13490967|gb|BG517731.1|BG517731
genomic: CAAAAATGGGAGAAGgtcagtttgg ... aatacattagGTACCTTTGGTCAGGTGTTGGAGTGTTGGGACAAGGAAAGGAAAGAAATGG
EST: ATAAGATCAATGCAAAAATGGGAGAAG GTACCTTTGGTCAGGTGTTGGAGTGTTGGGACAAGGAAAGGAAAGAAATGGEST: gi|211232064|gb|FL290151.1|FL290151
genomic: ATAAGATCAATGCAAAAATGGGAGAAGgtcagtttgg ... aatacattagGTACCTTTGGTCAGGTGTTGGAGTGTTGGGACAAGGAAAGGAAAGAAATGG
EST: ATAAGATCAATGCAAAAATGGGAGAAG GTACCTTTGGTCANGTGTTGGAGTGTTGGGACAAGGAAAGGAA-GAAATGGEST: gi|211232066|gb|FL290153.1|FL290153
genomic: ATAAGATCAATGCAAAAATGGGAGAAGgtcagtttgg ... aatacattagGTACCTTTGGTCAGGTGTTGGAGTGTTGGGACAAGGAAAGGAAAGAAATGG
EST: ATAAGATCAATGCAAAAATGGGAGAAG GTACCTTTGGTCAGGTGTEST: gi|211232068|gb|FL290155.1|FL290155
genomic: ATAAGATCAATGCAAAAATGGGAGAAGgtcagtttgg ... aatacattagGTACCTTTGGTCAGGTGT
EST: ATAAGATCAATGCAAAAATGGGGAGAAG -TACCTTTGGTCAGGTGTTTGGAGTGTTGGGGACA-GGAAAAGGAAAGAA
genomic: ATAAGATCAATGCAAAAATGGG-AGAAGgtcagtttgg ... aatacattagGTACCTTTGGTCAGGTGTT-GGAGTGTTGGG-ACAAGGAAA-GGAAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAGATCAATGCAAAAATGGGAGAAGgtcagtttggatggccatgtcttctgaaataattgattaaactcgcgtttggcatgctgtgcaacacatgcagcaggttatgtttgtaacgaatgtgtctggaatacattag
- AGATCA
- - - - - - - - - - GGAGAA