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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATCGGTTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatgtgttgctttgaaagtacaagttcctttgaattgcagtgtataggctttgcttaagtggtagagaactaaaaagaacttgaaaggaatgaa...

Basic information

species Zea mays
transcript GRMZM2G177970_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g54020.2 (Oryza sativa), 5'ss of exon 3
GAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATCGGTTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatgtgttgctttgaaagtacaagttcctttgaattgcagtgtataggctttgcttaag--tggtagagaactaaaaagaacttga-aaggaatgaa
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || || ||||||||||||||| ||||||||||| |   | ||     |  |   ||  | ||| ||    |||  |   |||  ||      ||   |  |    ||| |  |||    ||| ||  ||| | 
GAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATTGGTACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGgtagtg-gtttgagaactgcatcttatta-ttctttaattttgatggtaataatctcaaaagaaaatttttcagaaaccatgaagctagtgataaataatca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60398533|gb|DN231349.1|DN231349
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: gi|211458161|gb|FL127573.1|FL127573
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: gi|211458164|gb|FL127576.1|FL127576
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAAT
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAAT
EST: gi|76012104|gb|DT939274.1|DT939274
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: gi|211458162|gb|FL127574.1|FL127574
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: gi|211458163|gb|FL127575.1|FL127575
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA