1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGAGCTCGGCGCGCTGGGAGTCGTACACGCTGTTCCGCAAGTACGACGAGGACATGGTCTACTTCCACCGCGTCGGCGCCCAGAAGCTCACCGAAACAGgcacgtaggcaaacagttccccctttttttttcccctcctccatccaatctatagaaacaaaagttagcaaaaaactgatttaatttctgttcctgcgtgcag
species | Zea mays |
transcript | GRMZM2G175398_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGACATGGTCTACTTCCACCGCGTCGGCGCCCAGAAGCTCACCGAAACAG AGTCGTTCCGGTCCATCAAGTACCAGCCGCGGTCGATGTCGGAGCGGATCGEST: gi|71319240|gb|DR796383.1|DR796383
genomic: GGACATGGTCTACTTCCACCGCGTCGGCGCCCAGAAGCTCACCGAAACAGgcacgtaggc ... ctgcgtgcagAGTCGTTCCGGTCCATCAAGTACCAGCCGCGGTCGATGTCGGAGCGGATCG
EST: GGACATGGTCTACTTCCACCGCGTCGGCGCCCAGAAGCTCACCGAAACAG AGTCGTTCCGGTCCATCAAGTACCAGCCGCGGTCGATGTCGGAGCGGATCGEST: gi|148958364|gb|EC904593.2|EC904593
genomic: GGACATGGTCTACTTCCACCGCGTCGGCGCCCAGAAGCTCACCGAAACAGgcacgtaggc ... ctgcgtgcagAGTCGTTCCGGTCCATCAAGTACCAGCCGCGGTCGATGTCGGAGCGGATCG
EST: GGACATGGTCTACTTCCACCGCGTCGGCGCCCAGAAGCTCACCGAAACAG AGTCGTTCCGGTCCATCAAGTACCAGCCGCGGTCGATGTCGGAGCGGATCG
genomic: GGACATGGTCTACTTCCACCGCGTCGGCGCCCAGAAGCTCACCGAAACAGgcacgtaggc ... ctgcgtgcagAGTCGTTCCGGTCCATCAAGTACCAGCCGCGGTCGATGTCGGAGCGGATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAGCTCGGCGCGCTGGGAGTCGTACACGCTGTTCCGCAAGTACGACGAGGACATGGTCTACTTCCACCGCGTCGGCGCCCAGAAGCTCACCGAAACAGgcacgtaggcaaacagttccccctttttttttcccctcctccatccaatctatagaaacaaaagttagcaaaaaactgatttaatttctgttcctgcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA