1 5' 3' | 2 5' 3' | 3 5' 3' |
GATCACCTCGCGCTGATGATGGAGCTGCTAGGAATGATGCCTCGAAAGgtaagcagggtttcaatttacttggcatagttctttagcaaaggttgatagtgttcttaattttggtatacaactcatgtttcccag
species | Zea mays |
transcript | GRMZM2G171987_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATCACCTCGCGCTGATGATGGAGCTGCTAGGAATGATGCCTCGAAAG ATTGCGTTGGGTGGTCGGTATTCACGTGATTTCTTCAATCGGTATGGGGATEST: gi|28361749|gb|CB240105.1|CB240105
genomic: GATCACCTCGCGCTGATGATGGAGCTGCTAGGAATGATGCCTCGAAAGgtaagcaggg ... tgtttcccagATTGCGTTGGGTGGTCGGTATTCACGTGATTTCTTCAATCGGTATGGGGAT
EST: GATCACCTCGCGCTGATGATGGAGCTGCTAGGAATGATGCCTCGAAAG ATTGCGTTGGGTGGTCGGTATTCACGTGATTTCTTCAATCGGTATGGGGATEST: gi|149101079|gb|EE187180.2|EE187180
genomic: GATCACCTCGCGCTGATGATGGAGCTGCTAGGAATGATGCCTCGAAAGgtaagcaggg ... tgtttcccagATTGCGTTGGGTGGTCGGTATTCACGTGATTTCTTCAATCGGTATGGGGAT
EST: GATCACCTCGCGCTGATGATGGAGCTGCTAGGAATGATGCCTCGAAAG ATTGCGTTGGGTGGTCGGTATTCACGTGATTTCTTCAATCGGTATGGGGAT
genomic: GATCACCTCGCGCTGATGATGGAGCTGCTAGGAATGATGCCTCGAAAGgtaagcaggg ... tgtttcccagATTGCGTTGGGTGGTCGGTATTCACGTGATTTCTTCAATCGGTATGGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCACCTCGCGCTGATGATGGAGCTGCTAGGAATGATGCCTCGAAAGgtaagcagggtttcaatttacttggcatagttctttagcaaaggttgatagtgttcttaattttggtatacaactcatgtttcccag
- - - - - GCTGAT
- - - - - - - - GATGGA
- - - - - - - - - - GGAGCT
- - - - - - - - - - - AGCTGC
- - - - - - - - - - - GCTGCT