Sequence
atgc intronic sequence ATGC exonic sequenceTTCTTGAAGGTTCAGAAGAATGGCACAGGCGAGCATCTGCCCCCACCCAGGCCAAAACGGAAGGCAGCTCATCCATATCCCCAGAAATCATCTAAAAATGgtctgcgttattcaaggacctagctacttggcatgttttttttctagataacaagggatgactaaattcatttggcttctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G170148_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g45840.2 (Oryza sativa), 5'ss of exon 3
TTCTTGAAGGTTCAGAAGAATGGCACAGGCGAGCATCTGCCCCCACCCAGGCCAAAACGGAAGGCAGCTCATCCATATCCCCAGAAATCATCTAAAAATGgtctgcgttattcaaggacct-agctacttggcatgttttttttctagataacaagggatgactaa-attcatttggcttctgcag
|| |||||||||||||| ||||| ||||| || |||||||| |||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||||| || | ||| ||| || | || |||| | || | || | | | || | || | ||
TTTTTGAAGGTTCAGAAAAATGGTACAGGTGAACATCTGCCTCCACCCAGGCCAAAGCGGAAGGCAGCTCATCCATATCCACAGAAGGCCTCTAAAAATGgtttgtactgctcagcagcctcagtcttgtaatattttttgccatcaactatttctagttgggaagtagtaatcggaattatttag
upper sequence: GRMZM2G170148_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G37520.1 (Glycine max), 5'ss of exon 3
TTCTTGAAGGTTCAGAAGAATGGCACAGGCGAGCATCTGCCCCCACCCAGGCCAAAACGGAAGGCAGCTCATCCATATCCCCAGAAATCATCTAAAAATGgtctgcgttatt--caaggacctagctacttggcatgttttttttctagataacaagggatgactaaattcatttggcttctgcag
|| | || |||||||||| ||| ||| | || ||||| || |||||||| |||||| | || || | |||||||||||| |||||| | || ||||||||| | | | | | ||||| | | ||| || ||| || | | | ||| |
TTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAAAGAAAAGCTGTTCATCCATATCCTCAGAAAGCTTCAAAAAATGgttagaatcttcactatattttttgctacacaatttagtgcatttgtatctaataattgttagtgatatttggcag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60358291|gb|DN225264.1|DN225264EST: GCCAAAACGGAAGGCAGCTCATCCATATCCCCAGAAATCATCTAAAAATG TTTCTCAAACTATTTTATTACAAGAACAACCTACTCAGCGGGAGCAAGGTT
genomic: GCCAAAACGGAAGGCAGCTCATCCATATCCCCAGAAATCATCTAAAAATGgtctgcgtta ... gcttctgcagTTTCTCAAACTATTTTATTACAAGAACAACCTACTCAGCGGGAGCAAGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTTGAAGGTTCAGAAGAATGGCACAGGCGAGCATCTGCCCCCACCCAGGCCAAAACGGAAGGCAGCTCATCCATATCCCCAGAAATCATCTAAAAATGgtctgcgttattcaaggacctagctacttggcatgttttttttctagataacaagggatgactaaattcatttggcttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA