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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgccccggacgagatcccgtatcatttcgttgcttgttttgcgggatcgggctgttgggccgaatccattttgatggtgtccgtctagatcta...

Basic information

species Zea mays
transcript GRMZM2G165357_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g16980.3 (Oryza sativa), 5'ss of exon 2
-------------GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcg---ccccggacgagatcccgtatcatttcgttgcttgttttgcggg---atcgggctgttgggccgaatccattttgatggtgtccgtctagatcta
             || |||||| ||||||| ||||| || || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   |    || | |  |    |||| ||||||  ||| | |  ||||  |   || |||  ||| |   | ||  | ||   ||  |  ||   || ||  
TGTGTGTGTGCAGGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatgagatcctgtagtacgatccgtttcattt--ttgttcggcttgcttgtctattggggggtttg-tggcattgactt--gtgccggtcggtgaggtca-

upper sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 3
GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcg---ccccggacgagatcccgtatcatttcgttgcttgttttgcggg---atcgggctgttgggccgaatccattttgatggtgtccgtctagatcta
|| |||||| ||||||| ||||| || || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   |    || | |  |    |||| ||||||  ||| | |  ||||  |   || |||  ||| |   | ||  | ||   ||  |  ||   || ||  
GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatgagatcctgtagtacgatccgtttcattt--ttgttcggcttgcttgtctattggggggtttg-tggcattgactt--gtgccggtcggtgaggtca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148939205|gb|EC883670.2|EC883670
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32829264|gb|CD968942.1|CD968942
EST:     TCATCGGCTCGTACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAATTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211377009|gb|FL406724.1|FL406724
EST:     TCATCGGCTCGCACCTCGTAGACNAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|149065532|gb|EE286652.2|EE286652
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32787712|gb|CD936614.1|CD936614
EST:     TCATCGG-TCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211139565|gb|FL400395.1|FL400395
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211364308|gb|FL429333.1|FL429333
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211225658|gb|FL394160.1|FL394160
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211102135|gb|FL378499.1|FL378499
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32829447|gb|CD969125.1|CD969125
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211513418|gb|FL378838.1|FL378838
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211182716|gb|FL410032.1|FL410032
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32914071|gb|CF018883.1|CF018883
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211479897|gb|FL423797.1|FL423797
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211264125|gb|FL402706.1|FL402706
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211355257|gb|FL372995.1|FL372995
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211057982|gb|FL426572.1|FL426572
EST:     TCATCGGCTCGCACCTCGTAGACNAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|60394382|gb|DN227252.1|DN227252
EST:     CTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: CTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|71444250|gb|DR825300.1|DR825300
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|149082965|gb|EE172201.2|EE172201
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|71449953|gb|DR831003.1|DR831003
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211143536|gb|FL424879.1|FL424879
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211479918|gb|FL425086.1|FL425086
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32797525|gb|CD949761.1|CD949761
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211084498|gb|FL378036.1|FL378036
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32796729|gb|CD948965.1|CD948965
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|149070980|gb|EE159385.2|EE159385
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTAGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|60339871|gb|DN206844.1|DN206844
EST:     GCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: GCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32799379|gb|CD951615.1|CD951615
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211441206|gb|FL381374.1|FL381374
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32798044|gb|CD950280.1|CD950280
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211021925|gb|FL369377.1|FL369377
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211108221|gb|FL373168.1|FL373168
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|149070503|gb|EE158907.2|EE158907
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211042612|gb|FL405104.1|FL405104
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211535769|gb|FL372741.1|FL372741
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 291

GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 592

GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 768

GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1267

GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgccccggacgagatcccgtatcatttcgttgcttgttttgcgggatcgggctgttgggccgaatccattttgatggtgtccgtctagatcta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgcccc