1 5' 3' | 2 5' 3' | 3 5' 3' |
GTCCTCCATGGCTATCAGAGGAAGATATTTCTTACTATGCAGAAAAATTTGCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAGgtatgtgccttctggtcagtcaacaattttgatttcgcattttctttattgatgcaatcaatcatttaccatccaacaatttcctgttttttatttgcca...
species | Zea mays |
transcript | GRMZM2G161658_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCAAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAG GAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTCEST: gi|149079668|gb|EE168664.2|EE168664
genomic: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAGgtatgtgcct ... gctcatgtagGAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTC
EST: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAG GAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTCEST: gi|60356303|gb|DN223276.1|DN223276
genomic: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAGgtatgtgcct ... gctcatgtagGAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTC
EST: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAG GAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTCEST: gi|149055254|gb|EE156182.2|EE156182
genomic: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAGgtatgtgcct ... gctcatgtagGAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTC
EST: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAG GAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTCEST: gi|211338616|gb|FL266226.1|FL266226
genomic: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAGgtatgtgcct ... gctcatgtagGAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTC
EST: GCAAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAG GAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTCEST: gi|6918586|gb|AW400116.1|AW400116
genomic: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAGgtatgtgcct ... gctcatgtagGAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTC
EST: GCAAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAG GAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTCEST: gi|5791241|gb|AI978033.1|AI978033
genomic: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAGgtatgtgcct ... gctcatgtagGAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTC
EST: GCAAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAG GAGTTGGGAGCTTTNTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTCEST: gi|5871248|gb|AW017719.1|AW017719
genomic: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAGgtatgtgcct ... gctcatgtagGAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTC
EST: GCAAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAG GAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTCEST: gi|6020899|gb|AW065827.1|AW065827
genomic: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAGgtatgtgcct ... gctcatgtagGAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTC
EST: GCAAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAG GAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTCEST: gi|6095339|gb|AW120006.1|AW120006
genomic: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAGgtatgtgcct ... gctcatgtagGAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTC
EST: GCAAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAG GAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTC
genomic: GCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAGgtatgtgcct ... gctcatgtagGAGTTGGGAGCTTTCTGCGGCATGGACTGGAGCTCCGATAAAAGTTCCGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTCCATGGCTATCAGAGGAAGATATTTCTTACTATGCAGAAAAATTTGCGAAAACAGGCTTTACTGGAGGACTTAACTACTACAGGTGCATAGACAGgtatgtgccttctggtcagtcaacaattttgatttcgcattttctttattgatgcaatcaatcatttaccatccaacaatttcctgttttttatttgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA