1 5' 3' | 2 5' 3' | 3 5' 3' |
CCAAGAAGCAGCTGAAAAGGAAGCTGCTCTTGCAAGGAGGAGGCAAGAGAAGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtctaagcctctatgctttgtgtctttaaactacctttttttttctccaattcttactacaagataacatgtttcatgttgttctgatttggaagt...
species | Zea mays |
transcript | GRMZM2G159538_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGTEST: gi|94472507|gb|EB701465.1|EB701465
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtctaa ... gatgttgcagGTTCTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTTTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGTEST: gi|71765934|gb|DR963871.1|DR963871
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtctaa ... gatgttgcagGTTCTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGTEST: gi|211166960|gb|FL442997.1|FL442997
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtctaa ... gatgttgcagGTTCTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGTEST: gi|71760787|gb|DR958724.1|DR958724
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtctaa ... gatgttgcagGTTCTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGT
EST: AGGCCATGGTTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTATTCGG GTTTTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGTEST: gi|9254862|gb|BE345330.1|BE345330
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtctaa ... gatgttgcagGTTCTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTCTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGTEST: gi|88748410|gb|DY532551.1|DY532551
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtctaa ... gatgttgcagGTTCTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGT
EST: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGG GTTTTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGT
genomic: AGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtctaa ... gatgttgcagGTTCTCATAAGATTCCCAACGGGAGAGCGCAAAGAGCGGAGATTCCATAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAGAAGCAGCTGAAAAGGAAGCTGCTCTTGCAAGGAGGAGGCAAGAGAAGGCCATGGCTCTTGGAGCTGAACCTGAGAAAGGACCAGGTGTTACTCGGgtatgtctaagcctctatgctttgtgtctttaaactacctttttttttctccaattcttactacaagataacatgtttcatgttgttctgatttggaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagataa