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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagttcgtcagaatattctgaagatccaaatagcactatgcttttggtatacttttttcttaaaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatatccatcactatttgcacccactggtttcgttcttcctatctgtcatggtacttataagatacttatctttcag

Basic information

species Zea mays
transcript GRMZM2G157249_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157249_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagttcgtcagaat--attctgaagatccaaatagcactatgcttttggtatacttttttcttaaaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatatccatcactatttgcacccactggtttcgttcttcctatctgtcatggtacttataagatacttatctttcag
|||||||||||| || |||||||||||||| || ||||| ||||||||||||||||| || || ||||| || || || |||||||||||||||||||||||||||| | |  |        ||  ||  | |  |     | || |  ||| |||| |   | |||||| |       ||     |      |||   |||| | |         |  | | | ||                                                                           
TTTTGAGGTTCTCGGAGACAATGACTCTCCAGTTATGCCAATAATGCTCTACAATCCAGCCAAAATTCCAGCTTTTTCCAGGGAGTGCCTTAGACAAAAGgttagtaatggtatagaatgctatttatcttcagaaatggtacagaataatggtttttgc-cagttttttgtcgttccctagcccct------attaccgtgcgactgatgtggcactggcatttcag--------------------------------------------------------------------------

upper sequence: GRMZM2G157249_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagttcgtcagaatattctgaagatccaaatagcactatgcttttggtatacttttttc-ttaaaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatatccatcactatttgcacccactggtttcgttcttcctatctgtcatggtacttataagatacttatctttcag
 |||||||||||||| || ||||| ||||| || ||||| || ||||| ||||| ||||| || || ||||| || || || |||||||| |  || ||                 || |||| ||    || |||||| ||   |||||||  | ||  |     | | | | | || | |   ||||  ||||    || | | |    | |   |  ||                                                                               
ATTTGAGGTTCTTGGGGATAATGATTCTCCAGTAATGCCAATCATGCTTTACAACCCGGCCAAAATCCCTGCCTTTTCAAGAGAGTGCCTCAAGCAGAA----------------Tgtgagaacat--caaatatccaactat--ctatgctccttgttgataccctacatcatataagaatgaatttgttaatt--aatgtttacaattttttattt-cag-------------------------------------------------------------------------------

upper sequence: GRMZM2G157249_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagttcgtcagaatattctgaagatccaaatagcactatgcttttgg-tatacttttttcttaaaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatatccatcactatttgcacccactggtttcgttcttcctatctgtcatggtacttataagatacttatctttcag
 |||||||||||||| || ||||| ||||| || ||||| || ||||| ||||| || || || || ||||| ||||| || |||||||| |  || || || ||    |   | |  |   ||  ||         |     ||  |||  |  |  |  | || ||  | ||    |||  | |||||     |                                                                                                         
ATTTGAGGTTCTTGGGGATAATGATTCTCCAGTAATGCCAATCATGCTTTACAACCCCGCCAAAATCCCTGCCTTCTCAAGAGAGTGCCTCAAGCAGAATgtaagatcaaacatccaactttatgctccttgtcgataccctacatcatgtataagaatgaaattgttaatcaatgtttaccatttttgaattcag---------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G157249_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 11
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagttcgtcagaatattctgaagatccaaatagcactatgcttttggtatacttttttcttaaaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatatccatcactatttgcacccactggtttcgttcttcctatctgtcatggtacttataagatacttatctttcag
 |||||||||||||| || ||||| |||||||| ||||| |||||||| |||||||| || || |||||||| || ||  ||||||| || | ||| || || ||        ||  ||   |  ||||  | || ||       | || | | |  | |  || ||  |||||  |      | |  |  |  | | | | ||  |  ||     ||||      |    ||| || |      | |  |||    |   | | | || | | ||| | | ||| || |  | || |||
CTTTGAGGTTCTTGGAGATAATGATTCTCCTGTAATGCCAATAATGCTTTACAATCCAGCCAAAATTCCTGCCTTTTCGCGGGAGTGTCTCAAACAGAATgtaagc-------tttatctttaatttctatacattca-------ccattcatgtcttttcattcttgattaaagta------gctgcaatacagagattccaa--gtcattcatttgta--tagcactgctcattaat------ctccagttcaagttcacttgtgtggc-tagtattgacaagtta-tgctgttccag

upper sequence: GRMZM2G157249_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 10
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagttcgtcagaatattctgaagatccaaatagcactatgcttttggtatacttttttcttaaaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatatccatcactatttgcacccactggtttcgttcttcctatctgtcatggtacttataagatacttatctttcag
||||||||||||||| || ||||||||||| || ||||| |||||||| || ||||| |  || |||||||| |||||  | |||||||| |  ||||| ||        |||| | |||  | || |    |  | | |    |||||| || |   || ||    | |||    ||   |    |  ||  |||  | | ||| |||       | || ||    | |||  || |||           |   | | || |                                     
TTTTGAGGTTCTTGGGGATAATGACTCTCCAGTGATGCCAATAATGCTTTATAATCCTGGCAAAATTCCTGCCTTCTCGCGAGAGTGCCTCAAGCAAAATgt--------gagtccatcaagacatgcacgtgtcctata----actatgattattccattctggacttttagctcatgtcta---tatgacctgtccttcaaatggcaca----gtttattctcatttcatggctttttatcaaagtcaatggtgctgttacag-----------------------------------