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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagtcgtccttattagctgcatagtccgatgatctatttataggttatctagagaaaccgtccttaatatcttcatttgcacag

Basic information

species Zea mays
transcript GRMZM2G129015_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G39940.1 (Glycine max), 5'ss of exon 3
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagtcgtccttattagctgcatagtccgatgatctatttataggtta--------tctagagaaaccgtccttaatatcttcatttgcacag
|| |||||||||||| ||||  ||||||||||||||||||| |||||||| || || || ||||||||||| |||||  | ||  |||   |  |  | ||| ||   | | |       |  | | |||  |||  |        |||     |   |   || | ||  | ||||| |   
GACAAGGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAGGCTTGTGTCTACGAACgtaattttcttcttctt-ttcttttcttttcttttttctttttttgcaggaaaattccacgtcttatttatttggtttttaaattgttatttgtag--

upper sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G06000.1 (Glycine max), 5'ss of exon 2
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagtcgtcctta--ttagctgcatagtccgatgatctatttataggttatctagagaaaccgtcc---ttaatatcttcatttgcacag
|| |||||||| ||| ||||  ||||||||||||||||||| |||||||| || || || |||  ||| ||||||||  ||||  | || ||  || || |||  ||  ||   |  |  || ||    || | | ||  | ||    |    |     ||   ||  | |||| ||   
GACAAGGCTATTAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGTTGGAAGCCTGTgtctatga--gcataattttcttctttaccttctctcttttttttgaggaaaatttcacatgt-gtttatgttatttatttagtttttaattgttatttacag--

upper sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagtcgtcc-ttattagctgcatagtccgatgatctatttataggttatctagagaaaccgtccttaatatcttcatttgcacag
|| ||||| |||||| ||||  ||||||||||||||||||| |||||||| || || || |||||||| || |||||  ||||  ||| | |  |  | | |||||   | |||       |    | | | || ||||| ||     |   |    || |   | ||||   |||
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttttttcatgaaaatttcgcatctgtttatgttatttatttgtatttttaaaaaaaatattattt-tgcag

upper sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA14G38950.1 (Glycine max), 5'ss of exon 3
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagtcgtcc-ttatt-agctgcatagtccgatgatctatttata---ggttatctagagaaaccgtccttaatatcttcatttgcacag------
|| ||||| |||||| |||| ||||| |||||||||||||| |||||||| || || || |||||||| || |||||  ||||  |||   |  |  ||| ||||| |  |   || |   | ||    || | |   | |||| | |   |   ||  ||  | | || | |||   |       
GACAAGGCCATCAAGAGGTTTTTGGTTAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaattttcttatccgttatttatttatttatttttaggaaaatttcacatctgtttatgttgtttatttgttttt--ttttttaaattgtttatgtgcag

upper sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA12G16600.1 (Glycine max), 5'ss of exon 2
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATG---ATGg-tatcatagtcgtccttattagctgcatagtccgatgatctatttataggttatctagagaaaccgtcc--ttaatatcttc--atttgcacag-------
|| |||||||  ||| |||| |||||||||||||||||||| ||||||   || || || || |||||||| |  |   |||   |||    | ||  || || |  ||| ||   |  |    |  | | |||  |||  |  |  |    |  |    ||  | | ||   ||||    |        
GACAAGGCTAGGAAGAGGTTTTTGGTGAGGAACATTGTTGAACAGGCTTTAGTCAGAGATgttcaggaggcttaagcttatgtctatgaacgtaattttcttcttctttacctttctttttttgtttttttttttcaggagaattccatgtcctatttatttggtttttttgaatttttttaatttgtag

upper sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G21370.1 (Glycine max), 5'ss of exon 3
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgta-tcatagtcgtcct-tattagctgcatagtccgatgatctatttataggttatctagagaaaccgtccttaatatcttcatttgcacag-----
|| ||||| |||||| ||||  | ||||||||||||||||| |||||||| || || || |||||||| ||||||||  ||||  ||| | ||| |  || |  |||  |   |   |    |  | | ||  |||   |       | |||    ||  | | || |||   |        
GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataattttcttacattcaccttactctgttttttttttttcgtagaggaaactctcacacctgttttggttttttaattgttaatttgtag

upper sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA17G18200.1 (Glycine max), 5'ss of exon 3
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgta-tcatagtcgtcct-tatt-agctgcatagtccgatgatct---atttatag-gttatcta--gagaaaccgtccttaatatcttcatttgcacag-----------------------------------------------------------------------------------
|| ||||| |||||| ||||  | ||||||||||||||||| |||||||| || || || |||||||| ||||||||  ||||  ||| | ||| |  || | |||| | || | ||    ||  || |   |  | |   ||| | ||  |  |||      ||  ||  ||  || | |  |                                                                                   
GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataattttcttatatttaccttcttaaaaggaaaatttcacacctgtgttgttttttatcggcaaatgtagtttgttagttttgttagaaatgttgcttgaggatttgaacctctccctcctccctcttgttagaagtgttatttatttcgttgttttttaattgttgatttgtag

upper sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G14950.1 (Glycine max), 5'ss of exon 3
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagtcgtccttattagctg-catagtccgatgatctatttataggttatctagagaaaccgtccttaatatcttc---atttgcacag------
|| |||||||||||| ||||  ||||||||||||||||||| |||||||| || || || || |||||||| |||||  ||||  |||  ||  || || |  ||| ||  | |  | |  |  | |  || ||||  |  |  |    |  |   |  | | ||    |||||   |       
GACAAGGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTTCAGGAGGCTTGTGTCTATGAACgta--attttcttcttctttacctttcttttttctgtttttttgttgtaggagaattccacgtcctatttattttgttttttgaatttgttaatttgtag

upper sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv13s0067g02700.t01 (Vitis vinifera), 5'ss of exon 4
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagtcgtccttattagctgcatagtccgatgatctatttataggttatctagagaaaccgtccttaatatcttcatttgcacag
|| ||||| |||||| |||| |||||||||||||| || ||||| ||||| |||||||| || ||||||||||| ||  ||||  |||   ||  | ||||  ||   |   || |  | |  | | ||| |    |   | | |      | ||   | |              
GACAAGGCAATCAAGAGGTTTTTGGTGAGGAACATCGTGGAGCAAGCTGCAGTGAGGGATGTTCAGGAGGCCTGCGTCTATGACAgtaat-tacacttcctctttttttcggtaatttg-ttctgtgttttttatctgatttgggggctaattctctgtgtag------------

upper sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S375_10V6.1 (Physcomitrella patens), 5'ss of exon 3
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgta--tcatagtcgtccttattagctgcatagtccgatgatctatttataggttatctagagaaaccgtc---cttaatatcttcatttgcacag--------------------------------------
|| |||||  | |||||||| |||||  | |||||||| ||||||||||||||  | || ||||| |||||||||||  | || |||      | ||  | |    |  |||  |    || |    |  | |    |||  | ||   | | |     ||||  | |    ||  |||                                       
GACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACGgtgagctctggtttttcaatctttctgattcaatcggtctgatcctcaggaattagttggactgatcataacatttaaggtttagggttttacataacctaatttttcagatgcatatgacgcaacgtttcag

upper sequence: GRMZM2G129015_T02 (Zea mays), 5'ss of exon 3
lower sequence: PP1S169_19V6.1 (Physcomitrella patens), 5'ss of exon 3
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgta--------tcatagtcgtc---cttattagctgcatagtccgatgatctatttataggttatctagagaaaccgtccttaatat--cttcatttgcacag---------------------------------------------------------------
|| |||||  | |||||||| |||||| | |||||||||||||||||||||||  | || ||||| || || || ||  | |||||||          |||||| ||    | |||   || |    | ||| |   |     ||| ||  |    | |  ||  |  || |  |||    |  |||                                                                
GACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATGgtaagtgcagacaatagtcttcaaattcattttatgtaccacctgattagaaaggacgaggctaaattacaacagggttttggatgtgacttaccatttacaactcctgggcttcatggaggcaacatttgacgagttctgttgctgaattgtctatgtgttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211028008|gb|FL427829.1|FL427829
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211225818|gb|FL402226.1|FL402226
EST:     TGTTGAGCWGGCTGCTGTGAGGGACGTGCAGGARGC-TGTGTGCATGATG                         GATAKGTTCTTCCCAAATTGTACGCMAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211414076|gb|FL428568.1|FL428568
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCTTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211481696|gb|FL379732.1|FL379732
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211251914|gb|FL397017.1|FL397017
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCTTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211105084|gb|FL400881.1|FL400881
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211003074|gb|FL395294.1|FL395294
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGARGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211428718|gb|FL387537.1|FL387537
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211494447|gb|FL428213.1|FL428213
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATC
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATC
EST: gi|211008308|gb|FL375737.1|FL375737
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211300772|gb|FL380990.1|FL380990
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCTTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211029434|gb|FL377504.1|FL377504
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCTTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211098301|gb|FL430057.1|FL430057
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTKCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211182197|gb|FL384676.1|FL384676
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATC
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATC
EST: gi|211171486|gb|FL413937.1|FL413937
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATC
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATC
EST: gi|211060962|gb|FL426594.1|FL426594
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCTTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGNTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211079024|gb|FL378008.1|FL378008
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211360562|gb|FL385746.1|FL385746
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGASGCTTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211048101|gb|FL385531.1|FL385531
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211392940|gb|FL404132.1|FL404132
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCTTGTGTGCATGATG                         GATATGTTCTTCCCAAATCGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211474296|gb|FL410817.1|FL410817
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211509323|gb|FL409474.1|FL409474
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCTTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|60352753|gb|DN219726.1|DN219726
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCTTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211466709|gb|FL410769.1|FL410769
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG                         GATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGCG
EST: gi|211334464|gb|FL399680.1|FL399680
EST:     TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCTTGTGTGCATGATG                         GATATGTTCTTCCCCAAATTGTACGCAAAGGTTCATCACTGTGTCTCATGC
genomic: TGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagt ... atttgcacagGATATGTTCTTCCC-AAATTGTACGCAAAGGTTCATCACTGTGTCTCATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATGgtatcatagtcgtccttattagctgcatagtccgatgatctatttataggttatctagagaaaccgtccttaatatcttcatttgcacag

- - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - -  GCTGCT