1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATACAAACTTGGCACTGGGCTAGTTATTGCTCGAAGGGTGGATGACTCCTGGTCACCACCTTCAGCAATCTCCACCTGCGGTATTGGATATGGAGCTCAGgtgatacaagcttttcaagtttttttttatatggacagacttcttgtattaatctagcaccatgtaacatataagatatctgcttgactcatccaacag
species | Zea mays |
transcript | GRMZM2G128608_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTCACCACCTTCAGCAATCTCCACCTGCGGTATTGGATATGGAGCTCAG GCTGGAGGTGAGATAGCTGATTTTATCATTGTTCTGAGGAACACGGATGCCEST: gi|33098610|gb|CF058570.1|CF058570
genomic: GGTCACCACCTTCAGCAATCTCCACCTGCGGTATTGGATATGGAGCTCAGgtgatacaag ... catccaacagGCTGGAGGTGAGATAGCTGATTTTATCATTGTTCTGAGGAACACGGATGCC
EST: GGTCACCACCTTCAGCAATCTCCACCTGCGGTATTGGATATGGAGCTCAG GCTGGAGGTGAGATAGCTGATTTTATCATTGTTCTGAGGAACACGGATGCCEST: gi|33099242|gb|CF059202.1|CF059202
genomic: GGTCACCACCTTCAGCAATCTCCACCTGCGGTATTGGATATGGAGCTCAGgtgatacaag ... catccaacagGCTGGAGGTGAGATAGCTGATTTTATCATTGTTCTGAGGAACACGGATGCC
EST: GGTCACCACCTTCAGCAATCTCCACCTGCGGTATTGGATATGGAGCTCAG GCTGGAGGTGAGATAGCTGATTTTATCATTGTTCTGAGGAACACGGATGCC
genomic: GGTCACCACCTTCAGCAATCTCCACCTGCGGTATTGGATATGGAGCTCAGgtgatacaag ... catccaacagGCTGGAGGTGAGATAGCTGATTTTATCATTGTTCTGAGGAACACGGATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACAAACTTGGCACTGGGCTAGTTATTGCTCGAAGGGTGGATGACTCCTGGTCACCACCTTCAGCAATCTCCACCTGCGGTATTGGATATGGAGCTCAGgtgatacaagcttttcaagtttttttttatatggacagacttcttgtattaatctagcaccatgtaacatataagatatctgcttgactcatccaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA