Sequence
atgc intronic sequence ATGC exonic sequenceAATGAAGGCGCTGGCTGGGATGGTGGAGTGCCGCATTTGCCAGGAGGAGGACCTCGCAAAGAACCTCGAGAGCCCCTGTGCTTGCAGCGGCAGCCTCAAGgtgcgtgctgccttatttctcttcaaaccagagattctggatccatcccatgttgcttatgctgtttgcctctggttccttctattgtcaattcatagat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G118957_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g36740.3 (Oryza sativa), 5'ss of exon 1
AATGAAGGCGCTGGCTGGGATGGTGGAGTGCCGCATTTGCCAGGAGGAGGACCTCGCAAAGAACCTCGAGAGCCCCTGTGCTTGCAGCGGCAGCCTCAAGgtgcgtgctgccttatttctcttcaaaccagagattctggatccatcccatgttgcttatg-----ctgtttgcctctggttccttctattgtcaattcatagat
|| | ||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| || || |||| | ||| | || |||| | |||| |||| || || | |||||||| ||| | || || || ||| ||
AACGGGGGCGCTGATTGGGATGGTGGAATGCCGCATTTGCCAGGAGGAGGACCTCGCCAAGAACCTCGAGAGCCCCTGCGCTTGTAGCGGTAGCCTCAAGgtatgt----tgtttcttctatccaagcgagcagttcttgttccaatccatattaacgataaaattatttttgcctcaatttcatgggatcgttg-ttgatatat
upper sequence: GRMZM2G118957_T04 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA01G05800.1 (Glycine max), 5'ss of exon 2
AATGAAGGCGCTGGCTGGGATGGTGGAGTGCCGCATTTGCCAGGAGGAGGACCTCGCAAAGAACCTCGAGAGCCCCTGTGCTTGCAGCGGCAGCCTCAAGgtgcgtgctgccttatttctcttcaaaccagagattct--ggatccatcccatgttgcttatgctgtttgcctctggttccttctattgtcaattcatagat
| || ||||| ||||| |||||||||||| ||||||||||||||| || ||| | |||| ||||| || || |||||||| || ||||| | | | | | | | || | || || || | | || | || | || || | || ||| |
GGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAACTTGGAGACGCCCTGCGCCTGTAGCGGCAGTCTTAAGgtatcaatttttgtgtctttgatgattttgattttttttaaaatttattt-atttgaggtttggttttgttaagtatttgctagttatgatgatttctgcg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211209510|gb|FL044931.1|FL044931EST: ACCTCGCAAAGAACCTCGAGAGCCCCTGTGCTTGCAGCGGCAGCCTCAAG TATGCTCACAGGGAATGTGTGCAACGTTGGTGCAATGAGAAAGGAGATATA
genomic: ACCTCGCAAAGAACCTCGAGAGCCCCTGTGCTTGCAGCGGCAGCCTCAAGgtgcgtgctg ... gtttgcacagTATGCTCACAGGGAATGTGTGCAACGTTGGTGCAATGAGAAAGGAGATATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGAAGGCGCTGGCTGGGATGGTGGAGTGCCGCATTTGCCAGGAGGAGGACCTCGCAAAGAACCTCGAGAGCCCCTGTGCTTGCAGCGGCAGCCTCAAGgtgcgtgctgccttatttctcttcaaaccagagattctggatccatcccatgttgcttatgctgtttgcctctggttccttctattgtcaattcatagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC