1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGAGGTTGCCAGACGTGAAGCTATTGAAGCTACATTGGAGCGTAATCCAGATGCTTTTAGGCCTAAGATCGGGAGCAGTCCACATACGAATAGGAATAATgtatgttctgtggtccaaatattgttcgtgtagttactttctaaaggaacatttattgctatttttttcctttgagtttcaatacttatagcattgtcca...
species | Zea mays |
transcript | GRMZM2G104246_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGCTTTTAGGCCTAAGATCGGGAGCAGTCCACATACGAATAGGAATAAT GAGGTGTCTAGTGATCTCCCTTTAGTAGGGAAGCATAATAAAGGGTGCCATEST: gi|149084513|gb|EE173977.2|EE173977
genomic: ATGCTTTTAGGCCTAAGATCGGGAGCAGTCCACATACGAATAGGAATAATgtatgttctg ... aaattgctagGAGGTGTCTAGTGATCTCCCTTTAGTAGGGAAGCATAATAAAGGGTGCCAT
EST: ATGCTTTTAGGCCTAAGATCGGGAGCAGTCCACATACGAATAGGAATAAT GAGGTGTCTAGTGATCTCCCTTTAGTAGGGAAGCATAATAAAGGGGTGC-A
genomic: ATGCTTTTAGGCCTAAGATCGGGAGCAGTCCACATACGAATAGGAATAATgtatgttctg ... aaattgctagGAGGTGTCTAGTGATCTCCCTTTAGTAGGGAAGCATAATAAAGGG-TGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGTTGCCAGACGTGAAGCTATTGAAGCTACATTGGAGCGTAATCCAGATGCTTTTAGGCCTAAGATCGGGAGCAGTCCACATACGAATAGGAATAATgtatgttctgtggtccaaatattgttcgtgtagttactttctaaaggaacatttattgctatttttttcctttgagtttcaatacttatagcattgtcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaaca