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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCTAGATTTGTGGAAGAAACTACATGAGAAGGAGGCATCACGAGCTCAATCAATTGGCGATCCTGATAAAGTTACAGAAAAGACTTCAACTATTGAGgtgtttactctatgatatatgttcagattaagtactttgttttacttgtttctgcagtacaatttctcaatgcttggttaaatgttcacaaaggtacttg...

Basic information

species Zea mays
transcript GRMZM2G102196_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G102196_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g06270.1 (Oryza sativa), 5'ss of exon 5
AGCTCTAGATTTGTGGAAGAAACTACATGAGAAGGAGGCATCACGAGCTCAATCAATT---GGCGATCCTGATAAAGTTACAGAAAAGACTTC------AACTATTGAGgtgtttactctat-gatatatgttca----gattaagtactttgttttacttgtttctgcagtacaat-ttctcaatgcttggttaaatgttcacaaaggtacttg
          ||||||||||||||| ||||||||||| ||||| ||| ||||  || |   |  || | ||  |||  ||| |||| ||||||      |||| ||||||||||  |||||| ||  ||| ||||    || ||| |  |||  ||| ||  |||   || |   || ||| ||  |  |   |  |  ||     || |     
---------GTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAGAGTTCAACAAACTCAAGAAGACCATGCAAAAACTACGGAAAGGACTTCTGCTACAACTGTTGAGgtgttgcctctattgaattatattcaatttgagtaaatgatttactttgctcattttaccaatgagatgttcacataggctttctggac-ttagttcagtt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60347043|gb|DN214016.1|DN214016
EST:     AATCAATTGGCGATCCTGATAAAGTTACAGAAAAGACTTCAACTATTGAG                         TCTTTCAAAGAAGCACTCAACGAAGTCCGATTTTGCTCTAGAATGGAGGAA
genomic: AATCAATTGGCGATCCTGATAAAGTTACAGAAAAGACTTCAACTATTGAGgtgtttactc ... ccttgctcagTCTTTCAAAGAAGCACTCAACGAAGTCCGATTTTGCTCTAGAATGGAGGAA