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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCAAGCCAAACCTCTCTTCTTAAAGAGATTTACAGAAGTGACCCGGAGCGTGTCATACAAATATTTGAAAGCCATCCTTCATTACATTCTAATCCCGcagcactttcggagtatgtaaaagctcttgtaagggttgataggctggacgagagtgccttgcttaaaacactgcagagaggtaccaaagtcctaagaca...

Basic information

species Zea mays
transcript GRMZM2G096764_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096764_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g39260.1 (Oryza sativa), 5'ss of exon 3
TCACCAAGCCAAACCTCTCTTCTTAAAGAGATTTACAGAAGTGACCCGGAGCGTGTCATACAAATATTTGAAAGCCATCCTTCATTACATTCTAATCCCGcagcactttcggagtatgtaaaagctcttgtaagggttgataggctggacgagagtgccttgcttaaaacactgcagagaggtaccaaagtcctaagaca---------------------------------------------------------------------------------
                                                                                 ||||| ||||| |||||  |||||||| | |||||||||||||||||||| |||||||||||| |||| || ||  ||||||| |||||| ||||||||||||| ||   |     |||                                                                                 
---------------------------------------------------------------------------------TCATTGCATTCCAATCCTTCAGCACTTGCTGAGTATGTAAAAGCTCTTGTCAGGGTTGATAGGTTGGAGGATAGCACCTTGCTGAAAACATTGCAGAGAGgtactaataccgaccaacactttatctgtttcaggactattctgctgatttttgtgtgggttatgctactagtgtttattttccttatttgaagactgga

upper sequence: GRMZM2G096764_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g39250.1 (Oryza sativa), 5'ss of exon 3
TCACCAAGCCAAACCTCTCTTCTTAAAGAGATTTACAGAAGTGACCCGGAGCGTGTCATACAAATATTTGAAAGCCATCCTTCATTACATTCTAATCCCGcagcactttcggagtatgtaaaagctcttgtaagggttgataggctggacgagagtgccttgcttaaaacactgcagagaggtaccaaagtcctaagaca---------------------------------------------------------------------------------
                                                                                 |  || || || ||||    ||||||||| |||||||| ||||||||||| | ||||||||||||||| || ||  |||||||||||||||| | |||||||||| |  |||  | |||                                                                                 
---------------------------------------------------------------------------------TGGTTGCACTCCAATCGTTTAGCACTTTCAGAGTATGTTAAAGCTCTTGTCAAGGTTGATAGGCTGGATGATAGCACCTTGCTTAAAACACTACGGAGAGgtaccgatatccacaaacaccttatctatttcacggctatgaagcattacatctgctgcttttgttgggctatattagttttccttaattaaacagtgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93016229|gb|EB641749.1|EB641749
EST:     GCGTGTCATACAAATATTTGAAAGCCATCCTTCATTACATTCTAATCCTG                         CATGGGAGGCCGCGTGGCAGAAGAGCTTATATTTGGGGATACTGAGGTGAC
genomic: GCGTGTCATACAAATATTTGAAAGCCATCCTTCATTACATTCTAATCCCGcagcactttc ... tggatgtctgCATGGGAGGCCGCGTGGCAGAAGAGCTTATATTTGGGGATACTGAGGTGAC