1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatgcaacctaacagttctgtgattttatatgcattgctgcatccataacattgttacatgtcaactcccatttcttatgcag
species | Zea mays |
transcript | GRMZM2G095323_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|211366787|gb|FL192156.1|FL192156
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|78125182|gb|DV543566.1|DV543566
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAGGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|148956175|gb|EC901959.2|EC901959
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|71770155|gb|DR968092.1|DR968092
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|76293362|gb|DV032930.1|DV032930
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|71439253|gb|DR820303.1|DR820303
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|71310796|gb|DR791700.1|DR791700
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|148986012|gb|EE029858.2|EE029858
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCCAGCAAATGTEST: gi|89756630|gb|DY686595.1|DY686595
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAA-TATGAACTCCCAAGCAAATGTEST: gi|88755486|gb|DY539627.1|DY539627
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|71773093|gb|DR971011.1|DR971011
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|74233328|gb|DT641242.1|DT641242
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|78116974|gb|DV535361.1|DV535361
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|78115630|gb|DV534018.1|DV534018
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGTEST: gi|71428073|gb|DR809123.1|DR809123
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
EST: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAG TATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
genomic: TGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatg ... tcttatgcagTATTTGATGCCCTTCGTGGAAAAAGAAAAATATGAACTCCCAAGCAAATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAGGAGCCGTGCAGCTTGGGAAGCTATTGATGAGgtagcagatgcaacctaacagttctgtgattttatatgcattgctgcatccataacattgttacatgtcaactcccatttcttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT