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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAGgtgagcgtgattcccctcctcccctccaacctaactaacccaacaacactatgggagaaagtaaatatgtatctaaaagttgcaacttttgtttctatag...

Basic information

species Zea mays
transcript GRMZM2G088140_T03
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211496288|gb|FL041700.1|FL041700
EST:     CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAG                         GCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA
genomic: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAGgtgagcgtga ... tcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA
EST: gi|9952446|gb|BE639029.1|BE639029
EST:     TATCCAGATTGGTCTAGCTTCCAG                         GCATATCCCCCAATCCCACCACATGGATTCTTTCCCTCACCTGGGGCATCA
genomic: TATCCAGATTGGTCTAGCTTCCAGgtgagcgtga ... tcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA
EST: gi|60355311|gb|DN222284.1|DN222284
EST:     CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAG                         GCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA
genomic: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAGgtgagcgtga ... tcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA
EST: gi|211355418|gb|FL036286.1|FL036286
EST:     CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAG                         GCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA
genomic: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAGgtgagcgtga ... tcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA
EST: gi|211496289|gb|FL041701.1|FL041701
EST:     CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTRGCTTCCAG                         GCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCA
genomic: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAGgtgagcgtga ... tcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCA
EST: gi|71442579|gb|DR823629.1|DR823629
EST:     CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAG                         GCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCGCCTGTGGCATCA
genomic: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAGgtgagcgtga ... tcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCAGCAGCCACCTGCTACCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAGgtgagcgtgattcccctcctcccctccaacctaactaacccaacaacactatgggagaaagtaaatatgtatctaaaagttgcaacttttgtttctatag

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