1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGCGATGGGAGTGTTTACGACAAGAACCTTGCTGAGTTCTGTTGGAGTCTCTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAGgtaaaaacattataccatttcaggagctttcctttctcttgttcacaatactagtctgtacaatgtattcaagtcaataatctaactatccagagtgaaa...
species | Zea mays |
transcript | GRMZM2G081188_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAG GATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAGEST: gi|148953714|gb|EC899078.2|EC899078
genomic: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAGgtaaaaacat ... tgtaccacagGATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAG
EST: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAG GATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAGEST: gi|32837137|gb|CD976815.1|CD976815
genomic: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAGgtaaaaacat ... tgtaccacagGATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAG
EST: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAG GATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAGEST: gi|149076159|gb|EE164750.2|EE164750
genomic: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAGgtaaaaacat ... tgtaccacagGATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAG
EST: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAG GATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAGGGAAAGAAGEST: gi|31353527|gb|CD437884.1|CD437884
genomic: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAGgtaaaaacat ... tgtaccacagGATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAG
EST: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAG GATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAGEST: gi|148958478|gb|EC904716.2|EC904716
genomic: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAGgtaaaaacat ... tgtaccacagGATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAG
EST: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAG GATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAGEST: gi|148966241|gb|EE017202.2|EE017202
genomic: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAGgtaaaaacat ... tgtaccacagGATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAG
EST: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAG GATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAGEST: gi|211296912|gb|FL058764.1|FL058764
genomic: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAGgtaaaaacat ... tgtaccacagGATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAG
EST: CTCAAAGCAAGGTAACACCANGTGTCATTGCTATCAACTGGATCCTCAGG GATGGTGCTTGGCGTGTCGGGAAAATGCTTTTTGCCCCGTCA-GGAAAGA-EST: gi|149012213|gb|EE042512.2|EE042512
genomic: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAGgtaaaaacat ... tgtaccacagGATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCAC-GTCAAGGAAAGAA
EST: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAG GATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAG
genomic: CTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAGgtaaaaacat ... tgtaccacagGATGGTGCTGGGCGTGTCGGGAAAATGCTTTTTGCACGTCAAGGAAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCGATGGGAGTGTTTACGACAAGAACCTTGCTGAGTTCTGTTGGAGTCTCTCAAAGCAAGGTAACACCAGGTGCCATTGCTATCAACTGGATCCTCAAGgtaaaaacattataccatttcaggagctttcctttctcttgttcacaatactagtctgtacaatgtattcaagtcaataatctaactatccagagtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG