1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAAAAAGTGGGACCTGACGTGGCTGTGGAAGCTATGATGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGGgctggtttttgctcgggacttgcaaattataaatccagccatatggatggtttgcaattgaggcactaatgctacgtttcctccacgcag
species | Zea mays |
transcript | GRMZM2G079468_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGG GTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGATEST: gi|76289273|gb|DV028841.1|DV028841
genomic: TGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGGgctggttttt ... ctccacgcagGTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGAT
EST: TGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGG GTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGATEST: gi|148934464|gb|EC878503.2|EC878503
genomic: TGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGGgctggttttt ... ctccacgcagGTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGAT
EST: TGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGG GTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGATEST: gi|211457555|gb|FK992311.1|FK992311
genomic: TGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGGgctggttttt ... ctccacgcagGTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGAT
EST: TGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGG GTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGATEST: gi|211264190|gb|FL060868.1|FL060868
genomic: TGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGGgctggttttt ... ctccacgcagGTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGAT
EST: GTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGNAGG GTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGAEST: gi|94478417|gb|EB707375.1|EB707375
genomic: GTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAG-AGGgctggttttt ... ctccacgcagGTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGA
EST: TGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGG GTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGATEST: gi|74240416|gb|DT648330.1|DT648330
genomic: TGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGGgctggttttt ... ctccacgcagGTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGAT
EST: TGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGG GTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGAT
genomic: TGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGGgctggttttt ... ctccacgcagGTGTCTGTTTCATTCTCCACGTTCATTCAGTCGTGCAAGTCTTACCTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAAAGTGGGACCTGACGTGGCTGTGGAAGCTATGATGTCAAACACTGGCCATGTGTTCTACGGGGATCTCAGAAGCCATGAGAGGgctggtttttgctcgggacttgcaaattataaatccagccatatggatggtttgcaattgaggcactaatgctacgtttcctccacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG