1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTCTTGACCAAGAGTTCAAAGCAAGGCAAAGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGACCCAGgttttttgcatgacaagttctgcttttttctatccttcaacatcaattgcatatatcatactcattaagtcaagtgttccag
species | Zea mays |
transcript | GRMZM2G078711_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGTCCCAG GTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTTEST: gi|32838724|gb|CD978405.1|CD978405
genomic: AAGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGACCCAGgttttttgca ... agtgttccagGTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTT
EST: AGGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGTCCCAG GTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTTEST: gi|78105202|gb|DV523620.1|DV523620
genomic: AAGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGACCCAGgttttttgca ... agtgttccagGTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTT
EST: AAGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGACCCAG GTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTTEST: gi|76017583|gb|DT944753.1|DT944753
genomic: AAGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGACCCAGgttttttgca ... agtgttccagGTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTT
EST: AAGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGACCCAG GTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTTEST: gi|76015767|gb|DT942937.1|DT942937
genomic: AAGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGACCCAGgttttttgca ... agtgttccagGTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTT
EST: AAGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGACCCAG GTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTTEST: gi|211421421|gb|FL071937.1|FL071937
genomic: AAGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGACCCAGgttttttgca ... agtgttccagGTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTT
EST: AGGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGTCCCAG GTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTT
genomic: AAGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGACCCAGgttttttgca ... agtgttccagGTCAATTATCTCAGAGAGGAGCTACAAATGTTGTCTAAATCAAATCATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTGACCAAGAGTTCAAAGCAAGGCAAAGATGGGCCGTCGACCAGCAGGCCACATACTTCTGAGTTGTTGACCCAGgttttttgcatgacaagttctgcttttttctatccttcaacatcaattgcatatatcatactcattaagtcaagtgttccag
- - - - - - - - - - - - - - AAGATG