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AGTCGCCGGCGAGACCGGAGAGATGGAGGAGCCCGTCACTGGAGATGTCCAGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtgaagcaattctaaaaggagtttcggtgcggagtgcattttagaggattcatttcggtatcgctgtttggaatttcag
species | Zea mays |
transcript | GRMZM2G075978_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGG GCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCAEST: gi|149072922|gb|EE161180.2|EE161180
genomic: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtg ... ggaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
EST: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGG GCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCAEST: gi|76018573|gb|DT945743.1|DT945743
genomic: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtg ... ggaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
EST: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGG GCGGATTACATGTCGAAGCTGGTTAAAATAGCGGGAATAGCAATTGCTGCAEST: gi|71771847|gb|DR969784.1|DR969784
genomic: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtg ... ggaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
EST: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGG GCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCAEST: gi|5555510|gb|AI881461.1|AI881461
genomic: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtg ... ggaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
EST: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGG GCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCAEST: gi|211094415|gb|FL135593.1|FL135593
genomic: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtg ... ggaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
EST: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGG GCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCAEST: gi|211091940|gb|FL135577.1|FL135577
genomic: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtg ... ggaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
EST: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGG GCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCAEST: gi|31363701|gb|CD448058.1|CD448058
genomic: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtg ... ggaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
EST: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGG GCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCAEST: gi|18965101|gb|BM661392.1|BM661392
genomic: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtg ... ggaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
EST: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGG GCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCAEST: gi|148961713|gb|EE012483.2|EE012483
genomic: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtg ... ggaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
EST: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGG GCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCAEST: gi|149000777|gb|EE038000.2|EE038000
genomic: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtg ... ggaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
EST: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGG GCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCAEST: gi|71435362|gb|DR816412.1|DR816412
genomic: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtg ... ggaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
EST: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGG GCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
genomic: AGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtg ... ggaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATAGCGGGAATAGCAATTGCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCGCCGGCGAGACCGGAGAGATGGAGGAGCCCGTCACTGGAGATGTCCAGATTTTCCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTTGGGgtcagtagtgaagcaattctaaaaggagtttcggtgcggagtgcattttagaggattcatttcggtatcgctgtttggaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC