1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggactatcgattttactactattattgcaacattttaatataggtggtactactttttttttatcatgtgtaacattatacaggttctgaaact...
species | Zea mays |
transcript | GRMZM2G071620_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAAEST: gi|148980769|gb|EE027337.2|EE027337
genomic: TCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAAGT-GAGGTTTTACAEST: gi|78104753|gb|DV523171.1|DV523171
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGA-GTTGAGGTTTTACA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAAEST: gi|21331630|gb|BQ487011.1|BQ487011
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTTCCATCTTGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAAEST: gi|78085639|gb|DV514032.1|DV514032
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAAEST: gi|31909804|gb|CD651102.1|CD651102
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAAEST: gi|71436647|gb|DR817697.1|DR817697
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAAEST: gi|50326015|gb|CO521141.1|CO521141
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAAEST: gi|211530058|gb|FL388005.1|FL388005
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAAEST: gi|71448410|gb|DR829460.1|DR829460
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAAEST: gi|101383824|gb|EB813967.1|EB813967
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAAEST: gi|93016628|gb|EB642148.1|EB642148
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGGTTTACAAEST: gi|71436011|gb|DR817061.1|DR817061
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTT-ACAAEST: gi|50325855|gb|CO520981.1|CO520981
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAAEST: gi|211467003|gb|FL313839.1|FL313839
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGEST: gi|30031661|gb|CB833512.1|CB833512
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTG
EST: ACATCTATGCTTCAGCTGATGGTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTGTTACAEST: gi|76285216|gb|DV024784.1|DV024784
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTT-TTACA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAAEST: gi|32836421|gb|CD976099.1|CD976099
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
EST: ACATCTATGCTTCAGCTGATGCTGCAGTTCCATCTTGCGATGAGATGCAG AATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
genomic: ACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggac ... gaaaatgcagAATAACTATCAAGAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGCTTAAGACTCTAGAGCGGTACCAGAGGCACATCTATGCTTCAGCTGATGCTGCAGTGCCATCTAGCGATGAGATGCAGgtgcgcggactatcgattttactactattattgcaacattttaatataggtggtactactttttttttatcatgtgtaacattatacaggttctgaaact
- - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG